Mass-spectrometry-based microbial metabolomics: recent developments and applications

Comprehensive and simultaneous coverage of lipid and polar metabolites for endogenous cellular metabolomics using HILIC-TOF-MS

(2014) Fan Fei et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

A metabolomics-based method for studying the effect of yfcC gene in Escherichia coli on metabolism

(2014) Xiyue Wang et al.   ANALYTICAL BIOCHEMISTRY

Identifying inhibitory compounds in lignocellulosic biomass hydrolysates using an exometabolomics approach

(2014) Ying Zha et al.   BMC BIOTECHNOLOGY

GC/MS-based metabolomics approach to identify biomarkers differentiating survivals from death in crucian carps infected by Edwardsiella tarda

(2014) Chang Guo et al.   FISH & SHELLFISH IMMUNOLOGY

Influence of different proteolytic strains of Streptococcus thermophilus in co-culture with Lactobacillus delbrueckii subsp. bulgaricus on the metabolite profile of set-yoghurt

(2014) Sarn Settachaimongkon et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

iMatch2: Compound identification using retention index for analysis of gas chromatography–mass spectrometry data

(2014) Imhoi Koo et al.   JOURNAL OF CHROMATOGRAPHY A

Rapid and Sustained Systemic Circulation of Conjugated Gut Microbial Catabolites after Single-Dose Black Tea Extract Consumption

(2014) John van Duynhoven et al.   JOURNAL OF PROTEOME RESEARCH

Metabolomic Profiling and Genomic Study of a Marine Sponge-Associated Streptomyces sp.

(2014) Christina Viegelmann et al.   Marine Drugs

Methylcitrate cycle defines the bactericidal essentiality of isocitrate lyase for survival ofMycobacterium tuberculosison fatty acids

(2014) Hyungjin Eoh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Automated SPME–GC–MS monitoring of headspace metabolomic responses of E. coli to biologically active components extracted by the coating

(2013) S.M. Zakir Hossain et al.   ANALYTICA CHIMICA ACTA

Evaluation and Optimization of Metabolome Sample Preparation Methods for Saccharomyces cerevisiae

(2013) Sooah Kim et al.   ANALYTICAL CHEMISTRY

Real-Time Metabolomics on Living Microorganisms Using Ambient Electrospray Ionization Flow-Probe

(2013) Cheng-Chih Hsu et al.   ANALYTICAL CHEMISTRY

Enhanced FK506 production inStreptomyces tsukubaensisby rational feeding strategies based on comparative metabolic profiling analysis

(2013) Menglei Xia et al.   BIOTECHNOLOGY AND BIOENGINEERING

Integrated OMICS guided engineering of biofuel butanol-tolerance in photosynthetic Synechocystis sp. PCC 6803

(2013) Hongji Zhu et al.   Biotechnology for Biofuels

Metabolomics driven analysis of six Nigella species seeds via UPLC-qTOF-MS and GC–MS coupled to chemometrics

(2013) Mohamed A. Farag et al.   FOOD CHEMISTRY

Bacterial volatile discovery using solid phase microextraction and comprehensive two-dimensional gas chromatography–time-of-flight mass spectrometry

(2012) Heather D. Bean et al.   JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES

Targeted metabolomics for discrimination of systemic inflammatory disorders in critically ill patients

(2012) Diana Schmerler et al.   JOURNAL OF LIPID RESEARCH

A positive/negative ion–switching, targeted mass spectrometry–based metabolomics platform for bodily fluids, cells, and fresh and fixed tissue

(2012) Min Yuan et al.   Nature Protocols

MetaboAnalyst 2.0--a comprehensive server for metabolomic data analysis

(2012) J. Xia et al.   NUCLEIC ACIDS RESEARCH

A Yeast Metabolite Extraction Protocol Optimised for Time-Series Analyses

(2012) Kalesh Sasidharan et al.   PLoS One

Myxoprincomide: A Natural Product from Myxococcus xanthus Discovered by Comprehensive Analysis of the Secondary Metabolome

(2011) Niña Socorro Cortina et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

An Exometabolomics Approach to Monitoring Microbial Contamination in Microalgal Fermentation Processes by Using Metabolic Footprint Analysis

(2011) Tiffany Sue et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Mass Spectrometry Strategies in Metabolomics

(2011) Zhentian Lei et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Comprehensive hydrophilic interaction and ion-pair reversed-phase liquid chromatography for analysis of di- to deca-oligonucleotides

(2011) Qin Li et al.   JOURNAL OF CHROMATOGRAPHY A

Local release of ATP into the arterial inflow and venous drainage of human skeletal muscle: insight from ATP determination with the intravascular microdialysis technique

(2011) Stefan P. Mortensen et al.   JOURNAL OF PHYSIOLOGY-LONDON

LC-MS-based metabolomics

(2011) Bin Zhou et al.   Molecular BioSystems

Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease

(2011) Zeneng Wang et al.   NATURE

YMDB: the Yeast Metabolome Database

(2011) T. Jewison et al.   NUCLEIC ACIDS RESEARCH

Integrated Proteomic and Metabolomic Analysis of an Artificial Microbial Community for Two-Step Production of Vitamin C

(2011) Qian Ma et al.   PLoS One

Nanoscale Ion-Pair Reversed-Phase HPLC−MS for Sensitive Metabolome Analysis

(2010) Patrick Kiefer et al.   ANALYTICAL CHEMISTRY

A Metabolomic View of Staphylococcus aureus and Its Ser/Thr Kinase and Phosphatase Deletion Mutants: Involvement in Cell Wall Biosynthesis

(2010) Manuel Liebeke et al.   CHEMISTRY & BIOLOGY

Fast sampling for quantitative microbial metabolomics

(2010) Walter M van Gulik   CURRENT OPINION IN BIOTECHNOLOGY

Characterization of bacterial lipid profiles by using rapid sample preparation and fast comprehensive two-dimensional gas chromatography in combination with mass spectrometry

(2010) Giorgia Purcaro et al.   JOURNAL OF SEPARATION SCIENCE

Metabolic footprint analysis of recombinant Escherichia coli strains during fed-batch fermentations

(2010) Sónia Carneiro et al.   Molecular BioSystems

Metabolomic Profiling of Anionic Metabolites by Capillary Electrophoresis Mass Spectrometry

(2009) Tomoyoshi Soga et al.   ANALYTICAL CHEMISTRY

FiehnLib: Mass Spectral and Retention Index Libraries for Metabolomics Based on Quadrupole and Time-of-Flight Gas Chromatography/Mass Spectrometry

(2009) Tobias Kind et al.   ANALYTICAL CHEMISTRY

Hypoxia stimulates vesicular ATP release from rat osteoblasts

(2009) Isabel R. Orriss et al.   JOURNAL OF CELLULAR PHYSIOLOGY

Optimization of a GC-MS metabolic fingerprint method and its application in characterizing engineered bacterial metabolic shift

(2009) Jing Tian et al.   JOURNAL OF SEPARATION SCIENCE

Metabonomics Study on the Effects of the Ginsenoside Rg3 in a β-Cyclodextrin-Based Formulation on Tumor-Bearing Rats by a Fully Automatic Hydrophilic Interaction/Reversed-Phase Column-Switching HPLC−ESI-MS Approach

(2008) Yuan Wang et al.   ANALYTICAL CHEMISTRY

Global Metabolic Profiling ofEscherichia coliCultures:  an Evaluation of Methods for Quenching and Extraction of Intracellular Metabolites

(2008) Catherine L. Winder et al.   ANALYTICAL CHEMISTRY

Metabolic quenching of Corynebacterium glutamicum: efficiency of methods and impact of cold shock

(2008) Max Wellerdiek et al.   BIOPROCESS AND BIOSYSTEMS ENGINEERING

CE-MS in metabolomics

(2008) Rawi Ramautar et al.   ELECTROPHORESIS

Integrated Sampling Procedure for Metabolome Analysis

(2006) Jochen Schaub et al.   BIOTECHNOLOGY PROGRESS