Predicting antimicrobial resistance in Pseudomonas aeruginosa with machine learning‐enabled molecular diagnostics
Published 2020 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Predicting antimicrobial resistance in
Pseudomonas aeruginosa
with machine learning‐enabled molecular diagnostics
Authors
Keywords
-
Journal
EMBO Molecular Medicine
Volume 12, Issue 3, Pages -
Publisher
EMBO
Online
2020-02-12
DOI
10.15252/emmm.201910264
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Pseudomonas aeruginosa Polynucleotide Phosphorylase Contributes to Ciprofloxacin Resistance by Regulating PrtR
- (2019) Zheng Fan et al. Frontiers in Microbiology
- Mutagenesis Induced by Sub-Lethal Doses of Ciprofloxacin: Genotypic and Phenotypic Differences Between the Pseudomonas aeruginosa Strain PA14 and Clinical Isolates
- (2019) Letícia Busato Migliorini et al. Frontiers in Microbiology
- Constitutive Activation of MexT by Amino Acid Substitutions Results in MexEF-OprN Overproduction in Clinical Isolates of Pseudomonas aeruginosa
- (2018) Paulo Juarez et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Broad-spectrum adaptive antibiotic resistance associated with Pseudomonas aeruginosa mucin-dependent surfing motility
- (2018) Evelyn Sun et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- A pan-genome-based machine learning approach for predicting antimicrobial resistance activities of the Escherichia coli strains
- (2018) Hsuan-Lin Her et al. BIOINFORMATICS
- Machine learning identifies signatures of host adaptation in the bacterial pathogen Salmonella enterica
- (2018) Nicole E. Wheeler et al. PLoS Genetics
- The Versatile Mutational Resistome of Pseudomonas aeruginosa
- (2018) Carla López-Causapé et al. Frontiers in Microbiology
- Role of MexAB-OprM and MexXY-OprM efflux pumps and class 1 integrons in resistance to antibiotics in burn and Intensive Care Unit isolates of Pseudomonas aeruginosa
- (2018) Hamid R. Goli et al. Journal of Infection and Public Health
- Expression of Pseudomonas aeruginosa antibiotic resistance genes varies greatly during infections in cystic fibrosis patients
- (2018) Lois W Martin et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- MicroPheno: predicting environments and host phenotypes from 16S rRNA gene sequencing using a k-mer based representation of shallow sub-samples
- (2018) Ehsaneddin Asgari et al. BIOINFORMATICS
- Mobile Genetic Elements Associated with Antimicrobial Resistance
- (2018) Sally R. Partridge et al. CLINICAL MICROBIOLOGY REVIEWS
- Mutations causing low level antibiotic resistance ensure bacterial survival in antibiotic-treated hosts
- (2018) Jakob Frimodt-Møller et al. Scientific Reports
- Attributable deaths and disability-adjusted life-years caused by infections with antibiotic-resistant bacteria in the EU and the European Economic Area in 2015: a population-level modelling analysis
- (2018) Alessandro Cassini et al. LANCET INFECTIOUS DISEASES
- Prediction of antibiotic resistance in Escherichia coli from large-scale pan-genome data
- (2018) Danesh Moradigaravand et al. PLoS Computational Biology
- What we may expect from novel antibacterial agents in the pipeline with respect to resistance and pharmacodynamic principles
- (2017) Karen Bush et al. JOURNAL OF PHARMACOKINETICS AND PHARMACODYNAMICS
- Resistance of Animal Strains of Pseudomonas aeruginosa to Carbapenems
- (2017) Marisa Haenni et al. Frontiers in Microbiology
- Evolution of the Pseudomonas aeruginosa mutational resistome in an international Cystic Fibrosis clone
- (2017) Carla López-Causapé et al. Scientific Reports
- Evolution of Pseudomonas aeruginosa Antimicrobial Resistance and Fitness under Low and High Mutation Rates
- (2016) Gabriel Cabot et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Transcriptome Profiling of Antimicrobial Resistance in Pseudomonas aeruginosa
- (2016) Ariane Khaledi et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- The guanidinobutyrase GbuA is essential for the alkylquinolone-regulated pyocyanin production during parasitic growth of Pseudomonas aeruginosa in co-culture with Aeromonas hydrophila
- (2016) Nina Jagmann et al. ENVIRONMENTAL MICROBIOLOGY
- CARD 2017: expansion and model-centric curation of the comprehensive antibiotic resistance database
- (2016) Baofeng Jia et al. NUCLEIC ACIDS RESEARCH
- From Genomes to Phenotypes: Traitar, the Microbial Trait Analyzer
- (2016) Aaron Weimann et al. mSystems
- Roary: rapid large-scale prokaryote pan genome analysis
- (2015) Andrew J. Page et al. BIOINFORMATICS
- The increasing threat of Pseudomonas aeruginosa high-risk clones
- (2015) Antonio Oliver et al. DRUG RESISTANCE UPDATES
- The Pseudomonas aeruginosa Transcriptional Landscape Is Shaped by Environmental Heterogeneity and Genetic Variation
- (2015) Andreas Dötsch et al. mBio
- Rapid antibiotic-resistance predictions from genome sequence data for Staphylococcus aureus and Mycobacterium tuberculosis
- (2015) Phelim Bradley et al. Nature Communications
- The Resistome of Pseudomonas aeruginosa in Relationship to Phenotypic Susceptibility
- (2014) Veronica N. Kos et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Prokka: rapid prokaryotic genome annotation
- (2014) T. Seemann BIOINFORMATICS
- An analysis of FDA-approved drugs for infectious disease: antibacterial agents
- (2014) Michael S. Kinch et al. DRUG DISCOVERY TODAY
- Prediction of Staphylococcus aureus Antimicrobial Resistance by Whole-Genome Sequencing
- (2014) N. C. Gordon et al. JOURNAL OF CLINICAL MICROBIOLOGY
- MexY-Promoted Aminoglycoside Resistance in Pseudomonas aeruginosa: Involvement of a Putative Proximal Binding Pocket in Aminoglycoside Recognition
- (2014) C. H.-F. Lau et al. mBio
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
- (2013) K. Katoh et al. MOLECULAR BIOLOGY AND EVOLUTION
- Quantitative Contributions of Target Alteration and Decreased Drug Accumulation to Pseudomonas aeruginosa Fluoroquinolone Resistance
- (2012) Sebastian Bruchmann et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Adaptive and Mutational Resistance: Role of Porins and Efflux Pumps in Drug Resistance
- (2012) L. Fernandez et al. CLINICAL MICROBIOLOGY REVIEWS
- Challenges for accurate susceptibility testing, detection and interpretation of -lactam resistance phenotypes in Pseudomonas aeruginosa: results from a Spanish multicentre study
- (2012) C. Juan et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- The Regulatory Repertoire of Pseudomonas aeruginosa AmpC ß-Lactamase Regulator AmpR Includes Virulence Genes
- (2012) Deepak Balasubramanian et al. PLoS One
- BamTools: a C++ API and toolkit for analyzing and managing BAM files
- (2011) D. W. Barnett et al. BIOINFORMATICS
- ART: a next-generation sequencing read simulator
- (2011) Weichun Huang et al. BIOINFORMATICS
- A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data
- (2011) H. Li BIOINFORMATICS
- BIGSdb: Scalable analysis of bacterial genome variation at the population level
- (2011) Keith A Jolley et al. BMC BIOINFORMATICS
- Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: an international expert proposal for interim standard definitions for acquired resistance
- (2011) A.-P. Magiorakos et al. CLINICAL MICROBIOLOGY AND INFECTION
- Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads
- (2010) G. Lunter et al. GENOME RESEARCH
- FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments
- (2010) Morgan N. Price et al. PLoS One
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Antibacterial-Resistant Pseudomonas aeruginosa: Clinical Impact and Complex Regulation of Chromosomally Encoded Resistance Mechanisms
- (2009) P. D. Lister et al. CLINICAL MICROBIOLOGY REVIEWS
- β-Lactam Resistance Response Triggered by Inactivation of a Nonessential Penicillin-Binding Protein
- (2009) Bartolomé Moya et al. PLoS Pathogens
- Role of ampD Homologs in Overproduction of AmpC in Clinical Isolates of Pseudomonas aeruginosa
- (2008) A. J. Schmidtke et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Effect of Differences in MIC Values on Clinical Outcomes in Patients with Bloodstream Infections Caused by Gram-Negative Organisms Treated with Levofloxacin
- (2008) R. DeFife et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Novel Genetic Determinants of Low-Level Aminoglycoside Resistance in Pseudomonas aeruginosa
- (2008) K. N. Schurek et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationCreate your own webinar
Interested in hosting your own webinar? Check the schedule and propose your idea to the Peeref Content Team.
Create Now