G-OnRamp: Generating genome browsers to facilitate undergraduate-driven collaborative genome annotation

Apollo: Democratizing genome annotation

(2019) Nathan A. Dunn et al.   PLoS Computational Biology

A quick guide for student-driven community genome annotation

(2019) Prashant S. Hosmani et al.   PLoS Computational Biology

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update

(2018) Enis Afgan et al.   NUCLEIC ACIDS RESEARCH

An inclusive Research Education Community (iREC): Impact of the SEA-PHAGES program on research outcomes and student learning

(2017) David I. Hanauer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The GEP: Crowd-Sourcing Big Data Analysis with Undergraduates

(2017) Sarah C.R. Elgin et al.   TRENDS IN GENETICS

Retrotransposons Are the Major Contributors to the Expansion of the Drosophila ananassae Muller F Element

(2017) Wilson Leung et al.   G3-Genes Genomes Genetics

Implementation of a Collaborative Series of Classroom-Based Undergraduate Research Experiences Spanning Chemical Biology, Biochemistry, and Neurobiology

(2016) Jennifer R. Kowalski et al.   CBE-Life Sciences Education

Scaling Up: Adapting a Phage-Hunting Course to Increase Participation of First-Year Students in Research

(2016) Nancy L. Staub et al.   CBE-Life Sciences Education

Early Engagement in Course-Based Research Increases Graduation Rates and Completion of Science, Engineering, and Mathematics Degrees

(2016) Stacia E. Rodenbusch et al.   CBE-Life Sciences Education

The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences

(2016) Nirav Merchant et al.   PLOS BIOLOGY

BRAKER1: Unsupervised RNA-Seq-Based Genome Annotation with GeneMark-ET and AUGUSTUS: Table 1.

(2015) Katharina J. Hoff et al.   BIOINFORMATICS

Drosophila Muller F Elements Maintain a Distinct Set of Genomic Properties Over 40 Million Years of Evolution

(2015) Wilson Leung et al.   G3-Genes Genomes Genetics

Assessment of Course-Based Undergraduate Research Experiences: A Meeting Report

(2014) Lisa Corwin Auchincloss et al.   CBE-Life Sciences Education

Vision and Change through the Genome Consortium for Active Teaching Using Next-Generation Sequencing (GCAT-SEEK)

(2014) Vincent Buonaccorsi et al.   CBE-Life Sciences Education

A Course-Based Research Experience: How Benefits Change with Increased Investment in Instructional Time

(2014) Christopher D. Shaffer et al.   CBE-Life Sciences Education

A Broadly Implementable Research Course in Phage Discovery and Genomics for First-Year Undergraduate Students

(2014) T. C. Jordan et al.   mBio

Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC Genome Browser

(2013) B. J. Raney et al.   BIOINFORMATICS

The Genomics Education Partnership: Successful Integration of Research into Laboratory Classes at a Diverse Group of Undergraduate Institutions

(2010) Christopher D. Shaffer et al.   CBE-Life Sciences Education