Apollo: Democratizing genome annotation

Signatures of host specialization and a recent transposable element burst in the dynamic one-speed genome of the fungal barley powdery mildew pathogen

(2018) Lamprinos Frantzeskakis et al.   BMC GENOMICS

A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants

(2018) Sarah M. Pilkington et al.   BMC GENOMICS

The Toxicogenome of Hyalella azteca: A Model for Sediment Ecotoxicology and Evolutionary Toxicology

(2018) Helen C. Poynton et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Genetic Basis of Body Color and Spotting Pattern in Redheaded Pine Sawfly Larvae (Neodiprion lecontei)

(2018) Catherine R. Linnen et al.   GENETICS

The sea lamprey germline genome provides insights into programmed genome rearrangement and vertebrate evolution

(2018) Jeramiah J. Smith et al.   NATURE GENETICS

The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update

(2018) Enis Afgan et al.   NUCLEIC ACIDS RESEARCH

A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: Chrysomelidae)

(2018) Sean D. Schoville et al.   Scientific Reports

Genetic Basis of Body Color and Spotting Pattern in Redheaded Pine Sawfly Larvae (Neodiprion lecontei)

(2018) Catherine R. Linnen et al.   GENETICS

Draft genome assembly of the Bengalese finch, Lonchura striata domestica, a model for motor skill variability and learning

(2018) Bradley M Colquitt et al.   GigaScience

WormBase 2017: molting into a new stage

(2017) Raymond Y N Lee et al.   NUCLEIC ACIDS RESEARCH

Mouse Genome Database (MGD)-2018: knowledgebase for the laboratory mouse

(2017) Cynthia L Smith et al.   NUCLEIC ACIDS RESEARCH

Two genomes of highly polyphagous lepidopteran pests (Spodoptera frugiperda, Noctuidae) with different host-plant ranges

(2017) Anaïs Gouin et al.   Scientific Reports

Navigating the Phenotype Frontier: The Monarch Initiative

(2016) Julie A. McMurry et al.   GENETICS

Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta

(2016) Michael R. Kanost et al.   INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY

The Human Phenotype Ontology in 2017

(2016) Sebastian Köhler et al.   NUCLEIC ACIDS RESEARCH

Complete mitochondrial genome of the Verticillium-wilt causing plant pathogen Verticillium nonalfalfae

(2016) Vid Jelen et al.   PLoS One

Comprehensive Annotation of the Parastagonospora nodorum Reference Genome Using Next-Generation Genomics, Transcriptomics and Proteogenomics

(2016) Robert A. Syme et al.   PLoS One

Unique features of a global human ectoparasite identified through sequencing of the bed bug genome

(2016) Joshua B. Benoit et al.   Nature Communications

Navigating the Phenotype Frontier: The Monarch Initiative

(2016) Julie A. McMurry et al.   GENETICS

Annotated draft genome sequences of three species ofCryptosporidium:Cryptosporidium meleagridisisolate UKMEL1,C. baileyiisolate TAMU-09Q1 andC. hominisisolates TU502_2012 and UKH1

(2016) Olukemi O. Ifeonu et al.   Pathogens and Disease

De novogenome assembly ofGeosmithia morbida, the causal agent of thousand cankers disease

(2016) Taruna A. Schuelke et al.   PeerJ

Genome Sequence of the Edible Cultivated Mushroom Lentinula edodes (Shiitake) Reveals Insights into Lignocellulose Degradation

(2016) Lianfu Chen et al.   PLoS One

Xenbase: Core features, data acquisition, and data processing

(2015) Christina James-Zorn et al.   GENESIS

Hymenoptera Genome Database: integrating genome annotations in HymenopteraMine

(2015) Christine G. Elsik et al.   NUCLEIC ACIDS RESEARCH

PhytoPath: an integrative resource for plant pathogen genomics

(2015) Helder Pedro et al.   NUCLEIC ACIDS RESEARCH

Genome sequence of the Asian Tiger mosquito,Aedes albopictus, reveals insights into its biology, genetics, and evolution

(2015) Xiao-Guang Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

VectorBase: an updated bioinformatics resource for invertebrate vectors and other organisms related with human diseases

(2014) Gloria I. Giraldo-Calderón et al.   NUCLEIC ACIDS RESEARCH

The i5k Workspace@NAL—enabling genomic data access, visualization and curation of arthropod genomes

(2014) Monica Poelchau et al.   NUCLEIC ACIDS RESEARCH

The genome sequence and effector complement of the flax rust pathogen Melampsora lini

(2014) Adnane Nemri et al.   Frontiers in Plant Science

Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies

(2014) David B Neale et al.   GENOME BIOLOGY

Web Apollo: a web-based genomic annotation editing platform

(2013) Eduardo Lee et al.   GENOME BIOLOGY