Multiplexing cell‐cell communication

Programming Escherichia coli to function as a digital display

(2020) Jonghyeon Shin et al.   Molecular Systems Biology

De novo design of protein logic gates

(2020) Zibo Chen et al.   SCIENCE

Engineered promoters enable constant gene expression at any copy number in bacteria

(2018) Thomas H Segall-Shapiro et al.   NATURE BIOTECHNOLOGY

Stochastic Turing patterns in a synthetic bacterial population

(2018) David Karig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Tools for engineering coordinated system behaviour in synthetic microbial consortia

(2018) Nicolas Kylilis et al.   Nature Communications

Programmable protein circuits in living cells

(2018) Xiaojing J. Gao et al.   SCIENCE

A scalable peptide-GPCR language for engineering multicellular communication

(2018) Sonja Billerbeck et al.   Nature Communications

A photoconversion model for full spectral programming and multiplexing of optogenetic systems

(2017) Evan J Olson et al.   Molecular Systems Biology

Digital logic circuits in yeast with CRISPR-dCas9 NOR gates

(2017) Miles W. Gander et al.   Nature Communications

Collective Space-Sensing Coordinates Pattern Scaling in Engineered Bacteria

(2016) Yangxiaolu Cao et al.   CELL

Genetic circuit design automation

(2016) A. A. K. Nielsen et al.   SCIENCE

FlowCal: A User-Friendly, Open Source Software Tool for Automatically Converting Flow Cytometry Data from Arbitrary to Calibrated Units

(2016) Sebastian M. Castillo-Hair et al.   ACS Synthetic Biology

Quorum Sensing Communication Modules for Microbial Consortia

(2016) Spencer R. Scott et al.   ACS Synthetic Biology

Repurposing Synechocystis PCC6803 UirS–UirR as a UV-Violet/Green Photoreversible Transcriptional Regulatory Tool in E. coli

(2016) Prabha Ramakrishnan et al.   ACS Synthetic Biology

Emergent genetic oscillations in a synthetic microbial consortium

(2015) Y. Chen et al.   SCIENCE

Multi-input CRISPR/Cas genetic circuits that interface host regulatory networks

(2014) A. A. Nielsen et al.   Molecular Systems Biology

Characterizing bacterial gene circuit dynamics with optically programmed gene expression signals

(2014) Evan J Olson et al.   NATURE METHODS

R2oDNA Designer: Computational Design of Biologically Neutral Synthetic DNA Sequences

(2014) Arturo Casini et al.   ACS Synthetic Biology

Repurposing CRISPR as an RNA-Guided Platform for Sequence-Specific Control of Gene Expression

(2013) Lei S. Qi et al.   CELL

Dynamic Imaging of Genomic Loci in Living Human Cells by an Optimized CRISPR/Cas System

(2013) Baohui Chen et al.   CELL

Genomic mining of prokaryotic repressors for orthogonal logic gates

(2013) Brynne C Stanton et al.   Nature Chemical Biology

Characterization of 582 natural and synthetic terminators and quantification of their design constraints

(2013) Ying-Ja Chen et al.   NATURE METHODS

Precise and reliable gene expression via standard transcription and translation initiation elements

(2013) Vivek K Mutalik et al.   NATURE METHODS

Post-translational tools expand the scope of synthetic biology

(2012) Evan J Olson et al.   CURRENT OPINION IN CHEMICAL BIOLOGY

Ribozyme-based insulator parts buffer synthetic circuits from genetic context

(2012) Chunbo Lou et al.   NATURE BIOTECHNOLOGY

A Programmable Dual-RNA-Guided DNA Endonuclease in Adaptive Bacterial Immunity

(2012) M. Jinek et al.   SCIENCE

Signaling Mechanisms Controlling Cell Fate and Embryonic Patterning

(2012) N. Perrimon et al.   Cold Spring Harbor Perspectives in Biology

Sequential Establishment of Stripe Patterns in an Expanding Cell Population

(2011) C. Liu et al.   SCIENCE

Distributed biological computation with multicellular engineered networks

(2010) Sergi Regot et al.   NATURE

Robust multicellular computing using genetically encoded NOR gates and chemical ‘wires’

(2010) Alvin Tamsir et al.   NATURE

A synchronized quorum of genetic clocks

(2010) Tal Danino et al.   NATURE

Design, construction and characterization of a set of insulated bacterial promoters

(2010) J. H. Davis et al.   NUCLEIC ACIDS RESEARCH

A Synthetic Genetic Edge Detection Program

(2009) Jeffrey J. Tabor et al.   CELL

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

A synthetic Escherichia coli predator–prey ecosystem

(2008) Frederick K Balagaddé et al.   Molecular Systems Biology

A One Pot, One Step, Precision Cloning Method with High Throughput Capability

(2008) Carola Engler et al.   PLoS One