The combination of artificial intelligence and systems biology for intelligent vaccine design
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Title
The combination of artificial intelligence and systems biology for intelligent vaccine design
Authors
Keywords
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Journal
Expert Opinion on Drug Discovery
Volume -, Issue -, Pages 1-15
Publisher
Informa UK Limited
Online
2020-07-14
DOI
10.1080/17460441.2020.1791076
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Note: Only part of the references are listed.- Vaxign-ML: Supervised Machine Learning Reverse Vaccinology Model for Improved Prediction of Bacterial Protective Antigens
- (2020) Edison Ong et al. BIOINFORMATICS
- In silico trials: Verification, validation and uncertainty quantification of predictive models used in the regulatory evaluation of biomedical products
- (2020) Marco Viceconti et al. METHODS
- Epitope-based vaccine design: a comprehensive overview of bioinformatics approaches
- (2020) Sepideh Parvizpour et al. DRUG DISCOVERY TODAY
- NetMHCpan-4.1 and NetMHCIIpan-4.0: improved predictions of MHC antigen presentation by concurrent motif deconvolution and integration of MS MHC eluted ligand data
- (2020) Birkir Reynisson et al. NUCLEIC ACIDS RESEARCH
- Vaccine Strategies to Improve Anti-cancer Cellular Immune Responses
- (2019) Karim Vermaelen Frontiers in Immunology
- Turning the corner on therapeutic cancer vaccines
- (2019) Robert E. Hollingsworth et al. npj Vaccines
- ELM-MHC: An Improved MHC Identification Method with Extreme Learning Machine Algorithm
- (2019) Yanjuan Li et al. JOURNAL OF PROTEOME RESEARCH
- New Vaccine Design and Delivery Technologies
- (2019) Masaru Kanekiyo et al. JOURNAL OF INFECTIOUS DISEASES
- Immunotherapy in Bladder Cancer
- (2019) Venu Madhav Konala et al. AMERICAN JOURNAL OF THERAPEUTICS
- Structural Vaccinology for Viral Vaccine Design
- (2019) Mohd Ishtiaq Anasir et al. Frontiers in Microbiology
- Intracellular Pathogens: Host Immunity and Microbial Persistence Strategies
- (2019) Aneesh Thakur et al. Journal of Immunology Research
- OMIC Technologies and Vaccine Development: From the Identification of Vulnerable Individuals to the Formulation of Invulnerable Vaccines
- (2019) Nicola Cotugno et al. Journal of Immunology Research
- Human papillomavirus vaccination: The ESGO–EFC position paper of the European society of Gynaecologic Oncology and the European Federation for colposcopy
- (2019) Elmar A. Joura et al. EUROPEAN JOURNAL OF CANCER
- Artificial intelligence and immunotherapy
- (2019) Parnian Jabbari et al. Expert Review of Clinical Immunology
- Advances in cancer immunotherapy 2019 – latest trends
- (2019) Stephan Kruger et al. JOURNAL OF EXPERIMENTAL & CLINICAL CANCER RESEARCH
- SIMON, an Automated Machine Learning System, Reveals Immune Signatures of Influenza Vaccine Responses
- (2019) Adriana Tomic et al. JOURNAL OF IMMUNOLOGY
- The safety and immunogenicity of two novel live attenuated monovalent (serotype 2) oral poliovirus vaccines in healthy adults: a double-blind, single-centre phase 1 study
- (2019) Pierre Van Damme et al. LANCET
- In silico Design of an Epitope-Based Vaccine Ensemble for Chagas Disease
- (2019) Lucas Michel-Todó et al. Frontiers in Immunology
- Targeting Negative and Positive Immune Checkpoints with Monoclonal Antibodies in Therapy of Cancer
- (2019) Katsiaryna Marhelava et al. Cancers
- Predicting the artificial immunity induced by RUTI® vaccine against tuberculosis using universal immune system simulator (UISS)
- (2019) Marzio Pennisi et al. BMC BIOINFORMATICS
- Credibility of In Silico Trial Technologies—A Theoretical Framing
- (2019) Marco Viceconti et al. IEEE Journal of Biomedical and Health Informatics
- Editorial: Reverse Vaccinology
- (2019) Richard Moxon et al. Frontiers in Immunology
- Immune-evasion Strategies of Mycobacteria and Their Implications for the Protective Immune Response
- (2018) Alexandra G. Fraga et al. CURRENT ISSUES IN MOLECULAR BIOLOGY
- HIV Vaccination: A Roadmap among Advancements and Concerns
- (2018) Maria Trovato et al. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
- Multiple Sclerosis: Mechanisms and Immunotherapy
- (2018) Clare Baecher-Allan et al. NEURON
- Testing therapeutics in cell-based assays: Factors that influence the apparent potency of drugs
- (2018) Elena Postnikova et al. PLoS One
- WHO position paper, Meningococcal A conjugate vaccine: Updated guidance, February 2015
- (2018) World Health Organization VACCINE
- The Human Vaccines Project: Towards a comprehensive understanding of the human immune response to immunization
- (2018) Stacey L. Wooden et al. Human Vaccines & Immunotherapeutics
- Computational Strategies for Dissecting the High-Dimensional Complexity of Adaptive Immune Repertoires
- (2018) Enkelejda Miho et al. Frontiers in Immunology
- Artificial intelligence in drug development: present status and future prospects
- (2018) Kit-Kay Mak et al. DRUG DISCOVERY TODAY
- Systems vaccinology and big data in the vaccine development chain
- (2018) René H. M. Raeven et al. IMMUNOLOGY
- Predicting CD4 T-cell epitopes based on antigen cleavage, MHCII presentation, and TCR recognition
- (2018) Dina Schneidman-Duhovny et al. PLoS One
- Bacterial Vaccine Antigen Discovery in the Reverse Vaccinology 2.0 Era: Progress and Challenges
- (2018) Fadil A. Bidmos et al. Frontiers in Immunology
- Tracing Antibody Repertoire Evolution by Systems Phylogeny
- (2018) Alexander Dimitri Yermanos et al. Frontiers in Immunology
- VDJdb: a curated database of T-cell receptor sequences with known antigen specificity
- (2017) Mikhail Shugay et al. NUCLEIC ACIDS RESEARCH
- BepiPred-2.0: improving sequence-based B-cell epitope prediction using conformational epitopes
- (2017) Martin Closter Jespersen et al. NUCLEIC ACIDS RESEARCH
- Will Systems Biology Deliver Its Promise and Contribute to the Development of New or Improved Vaccines?
- (2017) Ronald N. Germain Cold Spring Harbor Perspectives in Biology
- Human In Silico Drug Trials Demonstrate Higher Accuracy than Animal Models in Predicting Clinical Pro-Arrhythmic Cardiotoxicity
- (2017) Elisa Passini et al. Frontiers in Physiology
- Fundamentals and Methods for T- and B-Cell Epitope Prediction
- (2017) Jose L. Sanchez-Trincado et al. Journal of Immunology Research
- The Future of Immunotherapy: A 20-Year Perspective
- (2017) David C. Wraith Frontiers in Immunology
- Molecular Signatures of Immunity and Immunogenicity in Infection and Vaccination
- (2017) Mariëlle C. Haks et al. Frontiers in Immunology
- Transcriptomics in Human Challenge Models
- (2017) Amber J. Barton et al. Frontiers in Immunology
- Assembly-based inference of B-cell receptor repertoires from short read RNA sequencing data with V’DJer
- (2016) Lisle E. Mose et al. BIOINFORMATICS
- A computational model to predict the immune system activation by citrus-derived vaccine adjuvants
- (2016) Francesco Pappalardo et al. BIOINFORMATICS
- Targeting the Heterogeneity of Cancer with Individualized Neoepitope Vaccines
- (2016) O. Tu reci et al. CLINICAL CANCER RESEARCH
- Systems immune monitoring in cancer therapy
- (2016) Allison R. Greenplate et al. EUROPEAN JOURNAL OF CANCER
- The clinical development process for a novel preventive vaccine: An overview
- (2016) K Singh et al. Journal of Postgraduate Medicine
- The vaccine development process
- (2016) Katherine E. Rolling et al. JOURNAL OF THE AMERICAN PHARMACISTS ASSOCIATION
- New approaches and omics tools for mining of vaccine candidates against vector-borne diseases
- (2016) Josipa Kuleš et al. Molecular BioSystems
- T cell fate and clonality inference from single-cell transcriptomes
- (2016) Michael J T Stubbington et al. NATURE METHODS
- Automated benchmarking of peptide-MHC class I binding predictions
- (2015) Thomas Trolle et al. BIOINFORMATICS
- Multiscale modelling in immunology: a review
- (2015) Antonio Cappuccio et al. BRIEFINGS IN BIOINFORMATICS
- Agent based modeling of the effects of potential treatments over the blood–brain barrier in multiple sclerosis
- (2015) Marzio Pennisi et al. JOURNAL OF IMMUNOLOGICAL METHODS
- Computational modelling approaches to vaccinology
- (2015) Francesco Pappalardo et al. PHARMACOLOGICAL RESEARCH
- Proteomic contributions to our understanding of vaccine and immune responses
- (2015) Allison C. Galassie et al. Proteomics Clinical Applications
- Utilizing population variation, vaccination, and systems biology to study human immunology
- (2015) John S. Tsang TRENDS IN IMMUNOLOGY
- Profiling tissue-resident T cell repertoires by RNA sequencing
- (2015) Scott D. Brown et al. Genome Medicine
- Application of “Systems Vaccinology” to Evaluate Inflammation and Reactogenicity of Adjuvanted Preventative Vaccines
- (2015) David J. M. Lewis et al. Journal of Immunology Research
- PEASE: predicting B-cell epitopes utilizing antibody sequence
- (2014) I. Sela-Culang et al. BIOINFORMATICS
- Improving B-cell epitope prediction and its application to global antibody-antigen docking
- (2014) Konrad Krawczyk et al. BIOINFORMATICS
- Challenges and responses in human vaccine development
- (2014) Stefan HE Kaufmann et al. CURRENT OPINION IN IMMUNOLOGY
- System Vaccinology for the Evaluation of Influenza Vaccine Safety by Multiplex Gene Detection of Novel Biomarkers in a Preclinical Study and Batch Release Test
- (2014) Takuo Mizukami et al. PLoS One
- Prediction of Interactions between Viral and Host Proteins Using Supervised Machine Learning Methods
- (2014) Ranjan Kumar Barman et al. PLoS One
- Systems vaccinology: Probing humanity's diverse immune systems with vaccines
- (2014) B. Pulendran PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Emerging immunotherapies for rheumatoid arthritis
- (2014) Gary Reynolds et al. Human Vaccines & Immunotherapeutics
- Efficacy of Neonatal HBV Vaccination on Liver Cancer and Other Liver Diseases over 30-Year Follow-up of the Qidong Hepatitis B Intervention Study: A Cluster Randomized Controlled Trial
- (2014) Chunfeng Qu et al. PLOS MEDICINE
- Modeling Biology Spanning Different Scales: An Open Challenge
- (2014) Filippo Castiglione et al. Biomed Research International
- Agent-Based Modeling of the Immune System: NetLogo, a Promising Framework
- (2014) Ferdinando Chiacchio et al. Biomed Research International
- Agent based modeling of Treg-Teff cross regulation in relapsing-remitting multiple sclerosis
- (2013) Marzio Pennisi et al. BMC BIOINFORMATICS
- Jenner-predict server: prediction of protein vaccine candidates (PVCs) in bacteria based on host-pathogen interactions
- (2013) Varun Jaiswal et al. BMC BIOINFORMATICS
- Selection of Conserved Epitopes from Hepatitis C Virus for Pan-Populational Stimulation of T-Cell Responses
- (2013) Magdalena Molero-Abraham et al. Clinical & Developmental Immunology
- Premature immune senescence during HIV-1 vertical infection relates with response to influenza vaccination
- (2013) Alberto Cagigi et al. JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY
- SVMTriP: A Method to Predict Antigenic Epitopes Using Support Vector Machine to Integrate Tri-Peptide Similarity and Propensity
- (2012) Bo Yao et al. PLoS One
- Systems biology applied to vaccine and immunotherapy development
- (2011) Luigi Buonaguro et al. BMC Systems Biology
- PROVENGE (Sipuleucel-T) in Prostate Cancer: The First FDA-Approved Therapeutic Cancer Vaccine
- (2011) M. A. Cheever et al. CLINICAL CANCER RESEARCH
- CD8+ T Cells: Foot Soldiers of the Immune System
- (2011) Nu Zhang et al. IMMUNITY
- HMMER web server: interactive sequence similarity searching
- (2011) R. D. Finn et al. NUCLEIC ACIDS RESEARCH
- Therapeutic vaccines for chronic diseases: successes and technical challenges
- (2011) M. F. Bachmann et al. PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES
- Artificial intelligence systems based on texture descriptors for vaccine development
- (2010) Loris Nanni et al. AMINO ACIDS
- Computational analysis and modeling of cleavage by the immunoproteasome and the constitutive proteasome
- (2010) Carmen M Diez-Rivero et al. BMC BIOINFORMATICS
- Systems Vaccinology
- (2010) Bali Pulendran et al. IMMUNITY
- Vaxign: The First Web-Based Vaccine Design Program for Reverse Vaccinology and Applications for Vaccine Development
- (2010) Yongqun He et al. JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY
- Uncovering the Complexity of Transcriptomes with RNA-Seq
- (2010) Valerio Costa et al. JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY
- Prediction of epitopes using neural network based methods
- (2010) Claus Lundegaard et al. JOURNAL OF IMMUNOLOGICAL METHODS
- Epitopia: a web-server for predicting B-cell epitopes
- (2009) Nimrod D Rubinstein et al. BMC BIOINFORMATICS
- Prediction of MHC-Peptide Binding: A Systematic and Comprehensive Overview
- (2009) Esther Lafuente et al. CURRENT PHARMACEUTICAL DESIGN
- Randomized, Double‐Blind Controlled Phase 3 Trial Comparing the Immunogenicity of High‐Dose and Standard‐Dose Influenza Vaccine in Adults 65 Years of Age and Older
- (2009) Ann R. Falsey et al. JOURNAL OF INFECTIOUS DISEASES
- Nature of the protein universe
- (2009) M. Levitt PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Quantitative modeling of peptide binding to TAP using support vector machine
- (2009) Carmen M. Diez-Rivero et al. PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
- PEPITO: improved discontinuous B-cell epitope prediction using multiple distance thresholds and half sphere exposure
- (2008) Michael J. Sweredoski et al. BIOINFORMATICS
- Artificial Intelligence techniques: An introduction to their use for modelling environmental systems
- (2008) Serena H. Chen et al. MATHEMATICS AND COMPUTERS IN SIMULATION
- Immune epitope database analysis resource (IEDB-AR)
- (2008) Q. Zhang et al. NUCLEIC ACIDS RESEARCH
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