Standards for Methods Utilizing Environmental DNA for Detection of Fish Species

Beyond Biodiversity: Can Environmental DNA (eDNA) Cut It as a Population Genetics Tool?

(2019) Clare I.M. Adams et al.   Genes

Rangewide tidewater goby occupancy survey using environmental DNA

(2019) Michael Sutter et al.   CONSERVATION GENETICS

Effective monitoring of freshwater fish

(2019) Johannes Radinger et al.   FISH AND FISHERIES

Taxonomic and geographical representation of freshwater environmental DNA research in aquatic conservation

(2019) Christina C. Belle et al.   AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS

Environmental DNA is not the tool by itself

(2019) Anaïs Lacoursière‐Roussel et al.   JOURNAL OF FISH BIOLOGY

Assessment of fish communities using environmental DNA: Effect of spatial sampling design in lentic systems of different sizes

(2019) Shan Zhang et al.   Molecular Ecology Resources

A practical guide to sample preservation and pre‐PCR processing of aquatic environmental DNA

(2019) Girish Kumar et al.   Molecular Ecology Resources

Understanding PCR Processes to Draw Meaningful Conclusions from Environmental DNA Studies

(2019) Ryan P. Kelly et al.   Scientific Reports

Performance of eDNA assays to detect and quantify an elusive benthic fish in upland streams

(2018) Rheyda Hinlo et al.   BIOLOGICAL INVASIONS

The sceptical optimist: challenges and perspectives for the application of environmental DNA in marine fisheries

(2018) Brian Klitgaard Hansen et al.   FISH AND FISHERIES

Freshwater fisheries assessment using environmental DNA: A primer on the method, its potential, and shortcomings as a conservation tool

(2018) Nathan T. Evans et al.   FISHERIES RESEARCH

The future of biotic indices in the ecogenomic era: Integrating (e)DNA metabarcoding in biological assessment of aquatic ecosystems

(2018) Jan Pawlowski et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Attracting Common Carp to a bait site with food reveals strong positive relationships between fish density, feeding activity, environmental DNA, and sex pheromone release that could be used in invasive fish management

(2018) Ratna Ghosal et al.   Ecology and Evolution

Uses and Misuses of Environmental DNA in Biodiversity Science and Conservation

(2018) Melania E. Cristescu et al.   Annual Review of Ecology Evolution and Systematics

Prospects and challenges of environmental DNA (eDNA) monitoring in freshwater ponds

(2018) Lynsey R. Harper et al.   HYDROBIOLOGIA

Utility of eDNA and occupancy models for monitoring an endangered fish across diverse riverine habitats

(2018) Garret J. Strickland et al.   HYDROBIOLOGIA

Toward an ecoregion scale evaluation of eDNA metabarcoding primers: A case study for the freshwater fish biodiversity of the Murray-Darling Basin (Australia)

(2018) Jonas Bylemans et al.   Ecology and Evolution

Confirmed observation: A North American Green Sturgeon Acipenser medirostris recorded in the Stanislaus River, California

(2018) Jesse T Anderson et al.   Journal of Fish and Wildlife Management

Tradeoffs of a portable, field-based environmental DNA platform for detecting invasive northern pike (Esox lucius) in Alaska

(2018) Adam Sepulveda et al.   Management of Biological Invasions

Monitoring seasonal distribution of an endangered anadromous sturgeon in a large river using environmental DNA

(2018) Nian Xu et al.   NATURWISSENSCHAFTEN

eDNA as a tool for identifying freshwater species in sustainable forestry: A critical review and potential future applications

(2018) Ashley A. Coble et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Freshwater biomonitoring in the Information Age

(2017) François Keck et al.   FRONTIERS IN ECOLOGY AND THE ENVIRONMENT

The importance of molecular markers and primer design when characterizing biodiversity from environmental DNA

(2017) Joanna R. Freeland   GENOME

Early detection monitoring for aquatic non-indigenous species: Optimizing surveillance, incorporating advanced technologies, and identifying research needs

(2017) Anett S. Trebitz et al.   JOURNAL OF ENVIRONMENTAL MANAGEMENT

Quantitative PCR multiplexes for simultaneous multispecies detection of Asian carp eDNA

(2017) Kristyne M. Wozney et al.   JOURNAL OF GREAT LAKES RESEARCH

Establishing an environmental DNA method to detect and estimate the biomass of Sakhalin taimen, a critically endangered Asian salmonid

(2017) Hiroki Mizumoto et al.   LIMNOLOGY

Isopropanol precipitation method for collecting fish environmental DNA

(2017) Hideyuki Doi et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

Improving reliability in environmental DNA detection surveys through enhanced quality control

(2017) Elise M. Furlan et al.   MARINE AND FRESHWATER RESEARCH

Application of environmental DNA analysis to inform invasive fish eradication operations

(2017) Phillip I. Davison et al.   NATURWISSENSCHAFTEN

Usefulness and limitations of sample pooling for environmental DNA metabarcoding of freshwater fish communities

(2017) Hirotoshi Sato et al.   Scientific Reports

Distinct seasonal migration patterns of Japanese native and non-native genotypes of common carp estimated by environmental DNA

(2017) Kimiko Uchii et al.   Ecology and Evolution

Application of environmental DNA analysis to inform invasive fish eradication operations

(2017) Phillip I. Davison et al.   Science of Nature

Methods to maximise recovery of environmental DNA from water samples

(2017) Rheyda Hinlo et al.   PLoS One

A systematic approach to evaluate the influence of environmental conditions on eDNA detection success in aquatic ecosystems

(2017) Bernhard C. Stoeckle et al.   PLoS One

Environmental DNA metabarcoding reveals local fish communities in a species-rich coastal sea

(2017) Satoshi Yamamoto et al.   Scientific Reports

Detection of rare and invasive freshwater fish species using eDNA pyrosequencing: Lake Iznik ichthyofauna revised

(2016) Emre Keskin et al.   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

Comparison of environmental DNA metabarcoding and conventional fish survey methods in a river system

(2016) Jennifer L.A. Shaw et al.   BIOLOGICAL CONSERVATION

Quantification of Environmental DNA (eDNA) Shedding and Decay Rates for Three Marine Fish

(2016) Lauren M. Sassoubre et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Aquatic biodiversity assessment for the lazy

(2016) Constanze Hoffmann et al.   MOLECULAR ECOLOGY

Environmental DNA metabarcoding of lake fish communities reflects long-term data from established survey methods

(2016) Bernd Hänfling et al.   MOLECULAR ECOLOGY

Next-generation monitoring of aquatic biodiversity using environmental DNA metabarcoding

(2016) Alice Valentini et al.   MOLECULAR ECOLOGY

Detecting the movement and spawning activity of bigheaded carps with environmental DNA

(2016) Richard A. Erickson et al.   Molecular Ecology Resources

Estimating fish abundance and biomass from eDNA concentrations: variability among capture methods and environmental conditions

(2016) Anaïs Lacoursière-Roussel et al.   Molecular Ecology Resources

Efficacy of Environmental DNA to Detect and Quantify Brook Trout Populations in Headwater Streams of the Adirondack Mountains, New York

(2016) Barry P. Baldigo et al.   TRANSACTIONS OF THE AMERICAN FISHERIES SOCIETY

Environmental DNA reveals that rivers are conveyer belts of biodiversity information

(2016) Kristy Deiner et al.   Nature Communications

Comparison of capture and storage methods for aqueous macrobial eDNA using an optimized extraction protocol: advantage of enclosed filter

(2016) Johan Spens et al.   Methods in Ecology and Evolution

Critical considerations for the application of environmental DNA methods to detect aquatic species

(2016) Caren S. Goldberg et al.   Methods in Ecology and Evolution

Estimating species richness using environmental DNA

(2016) Brett P. Olds et al.   Ecology and Evolution

Trails of river monsters: Detecting critically endangered Mekong giant catfish Pangasianodon gigas using environmental DNA

(2016) Bellemain Eva et al.   Global Ecology and Conservation

Population characteristics of a large whale shark aggregation inferred from seawater environmental DNA

(2016) Eva Egelyng Sigsgaard et al.   Nature Ecology & Evolution

Spatial Representativeness of Environmental DNA Metabarcoding Signal for Fish Biodiversity Assessment in a Natural Freshwater System

(2016) Raphaël Civade et al.   PLoS One

Detection of Adult Green Sturgeon Using Environmental DNA Analysis

(2016) Paul S. Bergman et al.   PLoS One

Environmental DNA as a monitoring tool for the endangered freshwater pearl mussel (Margaritifera margaritifera L.): a substitute for classical monitoring approaches?

(2015) Bernhard C. Stoeckle et al.   AQUATIC CONSERVATION-MARINE AND FRESHWATER ECOSYSTEMS

Moving environmental DNA methods from concept to practice for monitoring aquatic macroorganisms

(2015) Caren S. Goldberg et al.   BIOLOGICAL CONSERVATION

Environmental DNA – An emerging tool in conservation for monitoring past and present biodiversity

(2015) Philip Francis Thomsen et al.   BIOLOGICAL CONSERVATION

Droplet Digital Polymerase Chain Reaction (PCR) Outperforms Real-Time PCR in the Detection of Environmental DNA from an Invasive Fish Species

(2015) Hideyuki Doi et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Improving efficiency and reliability of environmental DNA analysis for silver carp

(2015) Jon J. Amberg et al.   JOURNAL OF GREAT LAKES RESEARCH

Techniques for the practical collection of environmental DNA: filter selection, preservation, and extraction

(2015) Toshifumi Minamoto et al.   LIMNOLOGY

Optimizing techniques to capture and extract environmental DNA for detection and quantification of fish

(2015) Jessica J. Eichmiller et al.   Molecular Ecology Resources

A framework for estimating the sensitivity of eDNA surveys

(2015) Elise M. Furlan et al.   Molecular Ecology Resources

Quantification of mesocosm fish and amphibian species diversity via environmental DNA metabarcoding

(2015) Nathan T. Evans et al.   Molecular Ecology Resources

Environmental DNA particle size distribution from Brook Trout (Salvelinus fontinalis)

(2015) Taylor M. Wilcox et al.   Conservation Genetics Resources

MiFish, a set of universal PCR primers for metabarcoding environmental DNA from fishes: detection of more than 230 subtropical marine species

(2015) M. Miya et al.   Royal Society Open Science

Use of Droplet Digital PCR for Estimation of Fish Abundance and Biomass in Environmental DNA Surveys

(2015) Hideyuki Doi et al.   PLoS One

Modeling the Sensitivity of Field Surveys for Detection of Environmental DNA (eDNA)

(2015) Martin T. Schultz et al.   PLoS One

Detection of invasive freshwater fish species using environmental DNA survey

(2014) Emre Keskin   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

The future of ancient DNA: Technical advances and conceptual shifts

(2014) Michael Hofreiter et al.   BIOESSAYS

Grass carp in the Great Lakes region: establishment potential, expert perceptions, and re-evaluation of experimental evidence of ecological impact

(2014) Marion E. Wittmann et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Environmental Conditions Influence eDNA Persistence in Aquatic Systems

(2014) Matthew A. Barnes et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

REVIEW: The detection of aquatic animal species using environmental DNA - a review of eDNA as a survey tool in ecology

(2014) Helen C. Rees et al.   JOURNAL OF APPLIED ECOLOGY

Replication levels, false presences and the estimation of the presence/absence from eDNA metabarcoding data

(2014) Gentile F. Ficetola et al.   Molecular Ecology Resources

The room temperature preservation of filtered environmental DNA samples and assimilation into a phenol-chloroform-isoamyl alcohol DNA extraction

(2014) Mark A. Renshaw et al.   Molecular Ecology Resources

Ancient and modern environmental DNA

(2014) Mikkel Winther Pedersen et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Using Environmental DNA to Census Marine Fishes in a Large Mesocosm

(2014) Ryan P. Kelly et al.   PLoS One

Environmental DNA for wildlife biology and biodiversity monitoring

(2014) Kristine Bohmann et al.   TRENDS IN ECOLOGY & EVOLUTION

Particle size distribution and optimal capture of aqueous macrobial eDNA

(2014) Cameron R. Turner et al.   Methods in Ecology and Evolution

Tracking ghosts: combined electrofishing and environmental DNA surveillance efforts for Asian carps in Ontario waters of Lake Erie

(2014) Chris Wilson et al.   Management of Biological Invasions

Detection of Asian carp DNA as part of a Great Lakes basin-wide surveillance program

(2013) Christopher L. Jerde et al.   CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES

Robust Detection of Rare Species Using Environmental DNA: The Importance of Primer Specificity

(2013) Taylor M. Wilcox et al.   PLoS One

The use of molecular tools in invasion biology: an emphasis on freshwater ecosystems

(2012) S. BLANCHET   FISHERIES MANAGEMENT AND ECOLOGY

Conservation in a cup of water: estimating biodiversity and population abundance from environmental DNA

(2012) DAVID M. LODGE et al.   MOLECULAR ECOLOGY

Environmental DNA

(2012) PIERRE TABERLET et al.   MOLECULAR ECOLOGY

Digital PCR hits its stride

(2012) Monya Baker   NATURE METHODS

Detection of a Diverse Marine Fish Fauna Using Environmental DNA from Seawater Samples

(2012) Philip Francis Thomsen et al.   PLoS One

Setting the stage – Building and working in an ancient DNA laboratory

(2011) Michael Knapp et al.   ANNALS OF ANATOMY-ANATOMISCHER ANZEIGER

From molecules to management: Adopting DNA-based methods for monitoring biological invasions in aquatic environments

(2011) John A. Darling et al.   ENVIRONMENTAL RESEARCH

Surveillance of fish species composition using environmental DNA

(2011) Toshifumi Minamoto et al.   LIMNOLOGY

Persistence of Environmental DNA in Freshwater Ecosystems

(2011) Tony Dejean et al.   PLoS One

“Sight-unseen” detection of rare aquatic species using environmental DNA

(2011) Christopher L. Jerde et al.   Conservation Letters

An Efficient Multistrategy DNA Decontamination Procedure of PCR Reagents for Hypersensitive PCR Applications

(2010) Sophie Champlot et al.   PLoS One