Differential Genome Size and Repetitive DNA Evolution in Diploid Species of Melampodium sect. Melampodium (Asteraceae)

Dating the Species Network: Allopolyploidy and Repetitive DNA Evolution in American Daisies (Melampodium sect. Melampodium, Asteraceae)

(2018) Jamie Mccann et al.   SYSTEMATIC BIOLOGY

StarBEAST2 Brings Faster Species Tree Inference and Accurate Estimates of Substitution Rates

(2017) Huw A. Ogilvie et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genome-wide repeat dynamics reflect phylogenetic distance in closely related allotetraploid Nicotiana (Solanaceae)

(2016) Steven Dodsworth et al.   PLANT SYSTEMATICS AND EVOLUTION

RevBayes: Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language

(2016) Sebastian Höhna et al.   SYSTEMATIC BIOLOGY

The Impact of Reconstruction Methods, Phylogenetic Uncertainty and Branch Lengths on Inference of Chromosome Number Evolution in American Daisies (Melampodium, Asteraceae)

(2016) Jamie McCann et al.   PLoS One

Satellite DNA in Plants: More than Just Rubbish

(2015) Manuel A. Garrido-Ramos   CYTOGENETIC AND GENOME RESEARCH

Analysis of the giant genomes ofFritillaria(Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size

(2015) Laura J. Kelly et al.   NEW PHYTOLOGIST

Comparative Genome Analysis Reveals Divergent Genome Size Evolution in a Carnivorous Plant Genus

(2015) Giang T. H. Vu et al.   Plant Genome

In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae

(2015) Jiří Macas et al.   PLoS One

Evolution of genome size and chromosome number in the carnivorous plant genus Genlisea (Lentibulariaceae), with a new estimate of the minimum genome size in angiosperms

(2014) Andreas Fleischmann et al.   ANNALS OF BOTANY

The Contributions of Transposable Elements to the Structure, Function, and Evolution of Plant Genomes

(2014) Jeffrey L. Bennetzen et al.   Annual Review of Plant Biology

Monte Carlo algorithms for Brownian phylogenetic models

(2014) B. Horvilleur et al.   BIOINFORMATICS

The Peculiar Landscape of Repetitive Sequences in the Olive (Olea europaea L.) Genome

(2014) Elena Barghini et al.   Genome Biology and Evolution

Bursts of transposable elements as an evolutionary driving force

(2014) A. Belyayev   JOURNAL OF EVOLUTIONARY BIOLOGY

When fathers are instant losers: homogenization of rDNA loci in recently formedCardamine × schulziitrigenomic allopolyploid

(2014) Judita Zozomová-Lihová et al.   NEW PHYTOLOGIST

Genome-Wide Analysis of Repeat Diversity across the Family Musaceae

(2014) Petr Novák et al.   PLoS One

Genomic Repeat Abundances Contain Phylogenetic Signal

(2014) S. Dodsworth et al.   SYSTEMATIC BIOLOGY

Ultrametric trees or phylograms for ancestral state reconstruction: Does it matter?

(2014) Natalie Cusimano et al.   TAXON

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads

(2013) P. Novak et al.   BIOINFORMATICS

The repetitive component of the sunflower genome as shown by different procedures for assembling next generation sequencing reads

(2013) Lucia Natali et al.   BMC GENOMICS

Genome size variation and evolution in the family Asteraceae

(2013) Joan Vallès et al.   CARYOLOGIA

Diploidization and genome size change in allopolyploids is associated with differential dynamics of low- and high-copy sequences

(2013) Simon Renny-Byfield et al.   PLANT JOURNAL

Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution

(2013) Daniël P Melters et al.   GENOME BIOLOGY

The evolutionary history of the white-rayed species of Melampodium (Asteraceae) involved multiple cycles of hybridization and polyploidization

(2012) C. A. Rebernig et al.   AMERICAN JOURNAL OF BOTANY

Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data

(2012) M. Kearse et al.   BIOINFORMATICS

Independent, Rapid and Targeted Loss of Highly Repetitive DNA in Natural and Synthetic Allopolyploids of Nicotiana tabacum

(2012) Simon Renny-Byfield et al.   PLoS One

THE PROMISCUOUS AND THE CHASTE: FREQUENT ALLOPOLYPLOID SPECIATION AND ITS GENOMIC CONSEQUENCES IN AMERICAN DAISIES (MELAMPODIUM SECT. MELAMPODIUM; ASTERACEAE)

(2011) Hanna Weiss-Schneeweiss et al.   EVOLUTION

Global sequence characterization of rice centromeric satellite based on oligomer frequency analysis in large-scale sequencing data

(2010) J. Macas et al.   BIOINFORMATICS

Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data

(2010) Petr Novák et al.   BMC BIOINFORMATICS

The largest eukaryotic genome of them all?

(2010) JAUME PELLICER et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

EARLY BURSTS OF BODY SIZE AND SHAPE EVOLUTION ARE RARE IN COMPARATIVE DATA

(2010) Luke J Harmon et al.   EVOLUTION

Chromosome Numbers, Karyotypes, and Evolution in Melampodium (Asteraceae)

(2009) Hanna Weiss‐Schneeweiss et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Molecular phylogenetic analyses of nuclear and plastid DNA sequences support dysploid and polyploid chromosome number changes and reticulate evolution in the diversification of Melampodium (Millerieae, Asteraceae)

(2009) Cordula Blöch et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants

(2009) J. S. Hawkins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of rDNA in Nicotiana Allopolyploids: A Potential Link between rDNA Homogenization and Epigenetics

(2008) A. Kovarik et al.   ANNALS OF BOTANY

The Dynamic Ups and Downs of Genome Size Evolution in Brassicaceae

(2008) M. A. Lysak et al.   MOLECULAR BIOLOGY AND EVOLUTION