Genome-Wide Analysis of Repeat Diversity across the Family Musaceae

RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads

(2013) P. Novak et al.   BIOINFORMATICS

“A draft Musa balbisiana genome sequence for molecular genetics in polyploid, inter- and intra-specific Musa hybrids”

(2013) Mark W Davey et al.   BMC GENOMICS

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The sacred lotus genome provides insights into the evolution of flowering plants

(2013) Yun Wang et al.   PLANT JOURNAL

Molecular Analysis and Genomic Organization of Major DNA Satellites in Banana (Musa spp.)

(2013) Jana Čížková et al.   PLoS One

Reappraisal of sectional taxonomy in Musa (Musaceae)

(2013) Markku Häkkinen   TAXON

Survey Sequencing Reveals Elevated DNA Transposon Activity, Novel Elements, and Variation in Repetitive Landscapes among Vesper Bats

(2012) H. J. T. Pagan et al.   Genome Biology and Evolution

Next-Generation Sequencing Reveals the Impact of Repetitive DNA Across Phylogenetically Closely Related Genomes of Orobanchaceae

(2012) Mathieu Piednoël et al.   MOLECULAR BIOLOGY AND EVOLUTION

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

(2012) Angélique D’Hont et al.   NATURE

Repeatless and Repeat-Based Centromeres in Potato: Implications for Centromere Evolution

(2012) Z. Gong et al.   PLANT CELL

The holocentric speciesLuzula elegansshows interplay between centromere and large-scale genome organization

(2012) Stefan Heckmann et al.   PLANT JOURNAL

The sunflower (Helianthus annuusL.) genome reflects a recent history of biased accumulation of transposable elements

(2012) S. Evan Staton et al.   PLANT JOURNAL

Selfish supernumerary chromosome reveals its origin as a mosaic of host genome and organellar sequences

(2012) M. M. Martis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Stretching the Rules: Monocentric Chromosomes with Multiple Centromere Domains

(2012) Pavel Neumann et al.   PLoS Genetics

A multi gene sequence-based phylogeny of the Musaceae (banana) family

(2011) Pavla Christelová et al.   BMC EVOLUTIONARY BIOLOGY

Genome Size and Transposable Element Content as Determined by High-Throughput Sequencing in Maize and Zea luxurians

(2011) Maud I. Tenaillon et al.   Genome Biology and Evolution

Next Generation Sequencing Reveals Genome Downsizing in Allotetraploid Nicotiana tabacum, Predominantly through the Elimination of Paternally Derived Repetitive DNAs

(2011) S. Renny-Byfield et al.   MOLECULAR BIOLOGY AND EVOLUTION

The ITS1-5.8S-ITS2 Sequence Region in the Musaceae: Structure, Diversity and Use in Molecular Phylogeny

(2011) Eva Hřibová et al.   PLoS One

Next Generation Sequencing-Based Analysis of Repetitive DNA in the Model Dioceous Plant Silene latifolia

(2011) Jiří Macas et al.   PLoS One

A platform for efficient genotyping in Musa using microsatellite markers

(2011) Pavla Christelová et al.   AoB Plants

Plant centromeric retrotransposons: a structural and cytogenetic perspective

(2011) Pavel Neumann et al.   Mobile DNA

Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data

(2010) Petr Novák et al.   BMC BIOINFORMATICS

Repetitive part of the banana (Musa acuminata) genome investigated by low-depth 454 sequencing

(2010) Eva Hřibová et al.   BMC PLANT BIOLOGY

Molecular phylogeny and systematics of the banana family (Musaceae) inferred from multiple nuclear and chloroplast DNA fragments, with a special reference to the genus Musa

(2010) Lin-Feng Li et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The genome of the domesticated apple (Malus × domestica Borkh.)

(2010) Riccardo Velasco et al.   NATURE GENETICS

FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix

(2009) M. N. Price et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Sorghum bicolor genome and the diversification of grasses

(2009) Andrew H. Paterson et al.   NATURE