The repetitive component of the sunflower genome as shown by different procedures for assembling next generation sequencing reads

The sunflower (Helianthus annuusL.) genome reflects a recent history of biased accumulation of transposable elements

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Building a model: developing genomic resources for common milkweed (Asclepias syriaca) with low coverage genome sequencing

(2011) Shannon CK Straub et al.   BMC GENOMICS

Transposable Element Proliferation and Genome Expansion Are Rare in Contemporary Sunflower Hybrid Populations Despite Widespread Transcriptional Activity of LTR Retrotransposons

(2011) Takeshi Kawakami et al.   Genome Biology and Evolution

Field guide to next-generation DNA sequencers

(2011) TRAVIS C. GLENN   Molecular Ecology Resources

Genome structural variation discovery and genotyping

(2011) Can Alkan et al.   NATURE REVIEWS GENETICS

Temporal dynamics in the evolution of the sunflower genome as revealed by sequencing and annotation of three large genomic regions

(2011) M. Buti et al.   THEORETICAL AND APPLIED GENETICS

Sniper: improved SNP discovery by multiply mapping deep sequenced reads

(2011) Daniel F Simola et al.   GENOME BIOLOGY

Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data

(2010) Petr Novák et al.   BMC BIOINFORMATICS

Applications of next generation sequencing in molecular ecology of non-model organisms

(2010) R Ekblom et al.   HEREDITY

Transposable element insertions have strongly affected human evolution

(2010) R. J. Britten   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

An analysis of sequence variability in eight genes putatively involved in drought response in sunflower (Helianthus annuus L.)

(2010) T. Giordani et al.   THEORETICAL AND APPLIED GENETICS

Genomic and small RNA sequencing of Miscanthus × giganteus shows the utility of sorghum as a reference genome sequence for Andropogoneae grasses

(2010) Kankshita Swaminathan et al.   GENOME BIOLOGY

The genomic organization of Ty3 /gypsy -like retrotransposons in Helianthus (Asteraceae) homoploid hybrid species

(2009) S. Evan Staton et al.   AMERICAN JOURNAL OF BOTANY

Proliferation of Ty3/gypsy-like retrotransposons in hybrid sunflower taxa inferred from phylogenetic data

(2009) Mark C Ungerer et al.   BMC BIOLOGY

What can you do with 0.1× genome coverage? A case study based on a genome survey of the scuttle fly Megaselia scalaris (Phoridae)

(2009) David A Rasmussen et al.   BMC GENOMICS

Copia and Gypsy retrotransposons activity in sunflower (Helianthus annuus L.)

(2009) Marco Vukich et al.   BMC PLANT BIOLOGY

The Sorghum bicolor genome and the diversification of grasses

(2009) Andrew H. Paterson et al.   NATURE

Evolution of Genome Size and Complexity in Pinus

(2009) Alison M. Morse et al.   PLoS One

Harnessing genomics for evolutionary insights

(2009) Antonis Rokas et al.   TRENDS IN ECOLOGY & EVOLUTION

Phylogenetic determination of the pace of transposable element proliferation in plants: copia and LINE-like elements in Gossypium

(2008) Jennifer S. Hawkins et al.   GENOME

The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)

(2008) Ray Ming et al.   NATURE

Sequencing breakthroughs for genomic ecology and evolutionary biology

(2007) MATTHEW E. HUDSON   Molecular Ecology Resources