In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae

The Ty1-copia LTR retroelement family PARTC is highly conserved in conifers over 200MY of evolution

(2015) Andrea Zuccolo et al.   GENE

Next-generation sequencing detects repetitive elements expansion in giant genomes of annual killifish genus Austrolebias (Cyprinodontiformes, Rivulidae)

(2015) G. García et al.   GENETICA

Analysis of the giant genomes ofFritillaria(Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size

(2015) Laura J. Kelly et al.   NEW PHYTOLOGIST

Genome assembly and annotation for red clover (Trifolium pratense ; Fabaceae)

(2014) Jan Ištvánek et al.   AMERICAN JOURNAL OF BOTANY

Evolution of genome size and chromosome number in the carnivorous plant genus Genlisea (Lentibulariaceae), with a new estimate of the minimum genome size in angiosperms

(2014) Andreas Fleischmann et al.   ANNALS OF BOTANY

The Contributions of Transposable Elements to the Structure, Function, and Evolution of Plant Genomes

(2014) Jeffrey L. Bennetzen et al.   Annual Review of Plant Biology

Differential genome evolution and speciation of Coix lacryma-jobi L. and Coix aquatica Roxb. hybrid guangxi revealed by repetitive sequence analysis and fine karyotyping

(2014) Zexi Cai et al.   BMC GENOMICS

Mating system shifts and transposable element evolution in the plant genus Capsella

(2014) J Ågren et al.   BMC GENOMICS

Plant genome size variation: bloating and purging DNA

(2014) T. P. Michael   Briefings in Functional Genomics

A step to the gigantic genome of the desert locust: chromosome sizes and repeated DNAs

(2014) J. P. M Camacho et al.   CHROMOSOMA

Genome-Wide Analysis of Repeat Diversity across the Family Musaceae

(2014) Petr Novák et al.   PLoS One

RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads

(2013) P. Novak et al.   BIOINFORMATICS

Distinguishing ecological from evolutionary approaches to transposable elements

(2013) Stefan Linquist et al.   BIOLOGICAL REVIEWS

Comparative Genomic Paleontology across Plant Kingdom Reveals the Dynamics of TE-Driven Genome Evolution

(2013) Moaine El Baidouri et al.   Genome Biology and Evolution

Transposable Elements: Powerful Contributors to Angiosperm Evolution and Diversity

(2013) Keith R. Oliver et al.   Genome Biology and Evolution

The dynamics of LTR retrotransposon accumulation across 25 million years of panicoid grass evolution

(2013) M C Estep et al.   HEREDITY

A universe of dwarfs and giants: genome size and chromosome evolution in the monocot family Melanthiaceae

(2013) Jaume Pellicer et al.   NEW PHYTOLOGIST

High-copy sequences reveal distinct evolution of the rye B chromosome

(2013) Sonja Klemme et al.   NEW PHYTOLOGIST

Systematics, biogeography, and character evolution of the legume tribe Fabeae with special focus on the middle-Atlantic island lineages

(2012) Hanno Schaefer et al.   BMC EVOLUTIONARY BIOLOGY

Survey Sequencing Reveals Elevated DNA Transposon Activity, Novel Elements, and Variation in Repetitive Landscapes among Vesper Bats

(2012) H. J. T. Pagan et al.   Genome Biology and Evolution

Next-Generation Sequencing Reveals the Impact of Repetitive DNA Across Phylogenetically Closely Related Genomes of Orobanchaceae

(2012) Mathieu Piednoël et al.   MOLECULAR BIOLOGY AND EVOLUTION

Repeatless and Repeat-Based Centromeres in Potato: Implications for Centromere Evolution

(2012) Z. Gong et al.   PLANT CELL

Why size really matters when sequencing plant genomes

(2012) Laura J. Kelly et al.   Plant Ecology & Diversity

Stretching the Rules: Monocentric Chromosomes with Multiple Centromere Domains

(2012) Pavel Neumann et al.   PLoS Genetics

Exploring giant plant genomes with next-generation sequencing technology

(2011) Laura J. Kelly et al.   CHROMOSOME RESEARCH

Genome Size and Transposable Element Content as Determined by High-Throughput Sequencing in Maize and Zea luxurians

(2011) Maud I. Tenaillon et al.   Genome Biology and Evolution

Next Generation Sequencing Reveals Genome Downsizing in Allotetraploid Nicotiana tabacum, Predominantly through the Elimination of Paternally Derived Repetitive DNAs

(2011) S. Renny-Byfield et al.   MOLECULAR BIOLOGY AND EVOLUTION

Next Generation Sequencing-Based Analysis of Repetitive DNA in the Model Dioceous Plant Silene latifolia

(2011) Jiří Macas et al.   PLoS One

Analyzing and minimizing PCR amplification bias in Illumina sequencing libraries

(2011) Daniel Aird et al.   GENOME BIOLOGY

Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data

(2010) Petr Novák et al.   BMC BIOINFORMATICS

The evolution of transposable elements in natural populations of self-fertilizing Arabidopsis thaliana and its outcrossing relative Arabidopsis lyrata

(2010) Steven Lockton et al.   BMC EVOLUTIONARY BIOLOGY

The largest eukaryotic genome of them all?

(2010) JAUME PELLICER et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

The Gypsy Database (GyDB) of mobile genetic elements: release 2.0

(2010) C. Llorens et al.   NUCLEIC ACIDS RESEARCH

Transposable elements: powerful facilitators of evolution

(2009) Keith R. Oliver et al.   BIOESSAYS

Evolutionary conserved lineage of Angela-family retrotransposons as a genome-wide microsatellite repeat dispersal agent

(2009) P Smýkal et al.   HEREDITY

Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants

(2009) J. S. Hawkins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Experimental evidence for splicing of intron-containing transcripts of plant LTR retrotransposon Ogre

(2008) Veronika Steinbauerová et al.   MOLECULAR GENETICS AND GENOMICS