The Potato Yam Phyllosphere Ectosymbiont Paraburkholderia sp. Msb3 Is a Potent Growth Promotor in Tomato

Adaptations and evolution of a heritable leaf nodule symbiosis between Dioscorea sansibarensis and Orrella dioscoreae

(2019) Frédéric De Meyer et al.   ISME Journal

Reclassification of Burkholderia insecticola as Caballeronia insecticola comb. nov. and reliability of conserved signature indels as molecular synapomorphies

(2019) Anatoly P. Dobritsa et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Versatile genome assembly evaluation with QUAST-LG

(2018) Alla Mikheenko et al.   BIOINFORMATICS

A nuclear Xdh phylogenetic analysis of yams (Dioscorea: Dioscoreaceae) congruent with plastid trees reveals a new Neotropical lineage

(2018) Juan Viruel et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Leaf nodule symbiosis: function and transmission of obligate bacterial endophytes

(2018) Marta Pinto-Carbó et al.   CURRENT OPINION IN PLANT BIOLOGY

Hopanoid lipids: from membranes to plant–bacteria interactions

(2018) Brittany J. Belin et al.   NATURE REVIEWS MICROBIOLOGY

A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life

(2018) Donovan H Parks et al.   NATURE BIOTECHNOLOGY

Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae

(2018) Paulina Estrada-de los Santos et al.   Genes

List of new names and new combinations previously effectively, but not validly, published

(2018) Aharon Oren et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

List of new names and new combinations previously effectively, but not validly, published

(2017) Aharon Oren et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

(2017) Benjamin J Callahan et al.   ISME Journal

Draft genome and description of Orrella dioscoreae gen. nov. sp. nov., a new species of Alcaligenaceae isolated from leaf acumens of Dioscorea sansibarensis

(2017) Aurelien Carlier et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Mechanisms of action of plant growth promoting bacteria

(2017) Oluwaseyi Samuel Olanrewaju et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Comparative Genomics of Burkholderia singularis sp. nov., a Low G+C Content, Free-Living Bacterium That Defies Taxonomic Dissection of the Genus Burkholderia

(2017) Peter Vandamme et al.   Frontiers in Microbiology

The genome analysis of C andidatus  Burkholderia crenata reveals that secondary metabolism may be a key function of the A rdisia crenata leaf nodule symbiosis

(2016) Aurelien Carlier et al.   ENVIRONMENTAL MICROBIOLOGY

Transfer of eleven species of the genus Burkholderia to the genus Paraburkholderia and proposal of Caballeronia gen. nov. to accommodate twelve species of the genera Burkholderia and Paraburkholderia

(2016) Anatoly P. Dobritsa et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Evidence of horizontal gene transfer between obligate leaf nodule symbionts

(2016) Marta Pinto-Carbó et al.   ISME Journal

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Phylogenomic Study of Burkholderia glathei-like Organisms, Proposal of 13 Novel Burkholderia Species and Emended Descriptions of Burkholderia sordidicola, Burkholderia zhejiangensis, and Burkholderia grimmiae

(2016) Charlotte Peeters et al.   Frontiers in Microbiology

Identification of protein secretion systems in bacterial genomes

(2016) Sophie S. Abby et al.   Scientific Reports

Isolation and Total Synthesis of Kirkamide, an Aminocyclitol from an Obligate Leaf Nodule Symbiont

(2015) Simon Sieber et al.   ANGEWANDTE CHEMIE-INTERNATIONAL EDITION

To split or not to split: an opinion on dividing the genus Burkholderia

(2015) Paulina Estrada-de los Santos et al.   ANNALS OF MICROBIOLOGY

Regulation of flagellar gene expression in Bacteria

(2015) I. A. Osterman et al.   BIOCHEMISTRY-MOSCOW

JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison

(2015) Michael Richter et al.   BIOINFORMATICS

Specific amplification of bacterial DNA by optimized so-called universal bacterial primers in samples rich of plant DNA

(2015) Samart Dorn-In et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes

(2014) M. Kim et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Plant-Associated Symbiotic Burkholderia Species Lack Hallmark Strategies Required in Mammalian Pathogenesis

(2014) Annette A. Angus et al.   PLoS One

MacSyFinder: A Program to Mine Genomes for Molecular Systems with an Application to CRISPR-Cas Systems

(2014) Sophie S. Abby et al.   PLoS One

Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental species

(2014) Amandeep Sawana et al.   Frontiers in Genetics

Diverse capacity for 2-methylhopanoid production correlates with a specific ecological niche

(2013) Jessica N Ricci et al.   ISME Journal

Ultrafast Approximation for Phylogenetic Bootstrap

(2013) B. Q. Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

(2013) Chen-Shan Chin et al.   NATURE METHODS

Going back to the roots: the microbial ecology of the rhizosphere

(2013) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Large-scale extraction of pure DNA from mature leaves of Cyclamen persicum Mill. and other recalcitrant plants with alkaline polyvinylpolypyrrolidone (PVPP)

(2013) Ichiro Kasajima et al.   SCIENTIA HORTICULTURAE

Comparative genome analysis of Burkholderia phytofirmans PsJN reveals a wide spectrum of endophytic lifestyles based on interaction strategies with host plants

(2013) Birgit Mitter et al.   Frontiers in Plant Science

The eroded genome of aPsychotrialeaf symbiont: hypotheses about lifestyle and interactions with its plant host

(2012) Aurelien L. Carlier et al.   ENVIRONMENTAL MICROBIOLOGY

Screening for leaf-associated endophytes in the genus Psychotria (Rubiaceae)

(2012) Benny Lemaire et al.   FEMS MICROBIOLOGY ECOLOGY

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Microbial life in the phyllosphere

(2012) Julia A. Vorholt   NATURE REVIEWS MICROBIOLOGY

Endosymbiont Transmission Mode in Bacterial Leaf Nodulation as Revealed by a Population Genetic Study of Psychotria leptophylla

(2011) Benny Lemaire et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Common Features of Environmental and Potentially Beneficial Plant-Associated Burkholderia

(2011) Zulma Rocío Suárez-Moreno et al.   MICROBIAL ECOLOGY

Potato cytosine methylation and gene expression changes induced by a beneficial bacterial endophyte, Burkholderia phytofirmans strain PsJN

(2011) Kedong Da et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Characterization of Burkholderia rhizoxinica and B. endofungorum Isolated from Clinical Specimens

(2011) Jay E. Gee et al.   PLoS One

Bacterial Leaf Symbiosis in Angiosperms: Host Specificity without Co-Speciation

(2011) Benny Lemaire et al.   PLoS One

A low-polynomial algorithm for assembling clusters of orthologous groups from intergenomic symmetric best matches

(2010) David M. Kristensen et al.   BIOINFORMATICS

BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments

(2010) Alexis Criscuolo et al.   BMC EVOLUTIONARY BIOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

First isolation of Burkholderia tropica from a neonatal patient successfully treated with imipenem

(2009) Zakuan Zainy Deris et al.   INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES

Expanded Multilocus Sequence Typing for Burkholderia Species

(2009) T. Spilker et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Multichromosomal Genome Structure and Confirmation of Diazotrophy in Novel Plant-Associated Burkholderia Species

(2008) L. Martinez-Aguilar et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Critical Evaluation of Two Primers Commonly Used for Amplification of Bacterial 16S rRNA Genes

(2008) J. A. Frank et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Glutathione transferases in bacteria

(2008) Nerino Allocati et al.   FEBS Journal