Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae

Brazilian species of Calliandra Benth. (tribe Ingeae) are nodulated by diverse strains of Paraburkholderia

(2018) Verônica Cordeiro Silva et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Genome-Based Characterization of Biological Processes That Differentiate Closely Related Bacteria

(2018) Marike Palmer et al.   Frontiers in Microbiology

Paraburkholderia piptadeniae sp. nov. and Paraburkholderia ribeironis sp. nov., two root-nodulating symbiotic species of Piptadenia gonoacantha in Brazil

(2017)   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

International Committee on Systematics of Prokaryotes Subcommittee for the Taxonomy of Rhizobium and Agrobacterium Minutes of the meeting, Budapest, 25 August 2016

(2017) Philippe M. de Lajudie et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

The oil-contaminated soil diazotroph Azoarcus olearius DQS-4T is genetically and phenotypically similar to the model grass endophyte Azoarcus sp. BH72

(2017) Helisson Faoro et al.   Environmental Microbiology Reports

Genome Data Provides High Support for Generic Boundaries in Burkholderia Sensu Lato

(2017) Chrizelle W. Beukes et al.   Frontiers in Microbiology

Competition Experiments for Legume Infection Identify Burkholderia phymatum as a Highly Competitive β-Rhizobium

(2017) Martina Lardi et al.   Frontiers in Microbiology

Biogeographical Patterns of Legume-Nodulating Burkholderia spp.: from African Fynbos to Continental Scales

(2016) Benny Lemaire et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Transfer of eleven species of the genus Burkholderia to the genus Paraburkholderia and proposal of Caballeronia gen. nov. to accommodate twelve species of the genera Burkholderia and Paraburkholderia

(2016) Anatoly P. Dobritsa et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies

(2016) Erfan Sayyari et al.   MOLECULAR BIOLOGY AND EVOLUTION

SymbioticBurkholderiaSpecies Show Diverse Arrangements ofnif/fixandnodGenes and Lack Typical High-Affinity Cytochromecbb3Oxidase Genes

(2016) Sofie E. De Meyer et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

EDGAR 2.0: an enhanced software platform for comparative gene content analyses

(2016) Jochen Blom et al.   NUCLEIC ACIDS RESEARCH

ggtree: anrpackage for visualization and annotation of phylogenetic trees with their covariates and other associated data

(2016) Guangchuang Yu et al.   Methods in Ecology and Evolution

Biosafety Test for Plant Growth-Promoting Bacteria: Proposed Environmental and Human Safety Index (EHSI) Protocol

(2016) Juan I. Vílchez et al.   Frontiers in Microbiology

To split or not to split: an opinion on dividing the genus Burkholderia

(2015) Paulina Estrada-de los Santos et al.   ANNALS OF MICROBIOLOGY

ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes

(2015) Siavash Mirarab et al.   BIOINFORMATICS

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

FASconCAT-G: extensive functions for multiple sequence alignment preparations concerning phylogenetic studies

(2014) Patrick Kück et al.   Frontiers in Zoology

Burkholderia sp. Induces Functional Nodules on the South African Invasive Legume Dipogon lignosus (Phaseoleae) in New Zealand Soils

(2014) Wendy Y. Y. Liu et al.   MICROBIAL ECOLOGY

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Plant-Associated Symbiotic Burkholderia Species Lack Hallmark Strategies Required in Mammalian Pathogenesis

(2014) Annette A. Angus et al.   PLoS One

Complete Genome sequence of Burkholderia phymatum STM815T, a broad host range and efficient nitrogen-fixing symbiont of Mimosa species

(2014) Lionel Moulin et al.   Standards in Genomic Sciences

Molecular signatures and phylogenomic analysis of the genus Burkholderia: proposal for division of this genus into the emended genus Burkholderia containing pathogenic organisms and a new genus Paraburkholderia gen. nov. harboring environmental species

(2014) Amandeep Sawana et al.   Frontiers in Genetics

Phylogenetic Analysis of Burkholderia Species by Multilocus Sequence Analysis

(2013) Paulina Estrada-de los Santos et al.   CURRENT MICROBIOLOGY

Burkholderia Species Are the Most Common and Preferred Nodulating Symbionts of the Piptadenia Group (Tribe Mimoseae)

(2013) Caroline Bournaud et al.   PLoS One

Burkholderia diazotrophica sp. nov., isolated from root nodules of Mimosa spp.

(2012) S.-Y. Sheu et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Burkholderia dabaoshanensis sp. nov., a Heavy-Metal-Tolerant Bacteria Isolated from Dabaoshan Mining Area Soil in China

(2012) Honghui Zhu et al.   PLoS One

Diazotrophic Burkholderia species isolated from the Amazon region exhibit phenotypical, functional and genetic diversity

(2012) Krisle da Silva et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Evolution of an endofungal Lifestyle: Deductions from the Burkholderia rhizoxinica Genome

(2011) Gerald Lackner et al.   BMC GENOMICS

Burkholderia symbiotica sp. nov., isolated from root nodules of Mimosa spp. native to north-east Brazil

(2011) S.-Y. Sheu et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Common Features of Environmental and Potentially Beneficial Plant-Associated Burkholderia

(2011) Zulma Rocío Suárez-Moreno et al.   MICROBIAL ECOLOGY

Legume-Nodulating Betaproteobacteria: Diversity, Host Range, and Future Prospects

(2011) Prasad Gyaneshwar et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Extreme genome reduction in symbiotic bacteria

(2011) John P. McCutcheon et al.   NATURE REVIEWS MICROBIOLOGY

Burkholderia phymatum Strains Capable of Nodulating Phaseolus vulgaris Are Present in Moroccan Soils

(2010) C. Talbi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Nodulation and nitrogen fixation by Mimosa spp. in the Cerrado and Caatinga biomes of Brazil

(2010) Fábio Bueno dos Reis Jr et al.   NEW PHYTOLOGIST

Burkholderiaspecies are ancient symbionts of legumes

(2009) CYRIL BONTEMPS et al.   MOLECULAR ECOLOGY

Shifting the genomic gold standard for the prokaryotic species definition

(2009) Michael Richter et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Identification and Onion Pathogenicity of Burkholderia cepacia Complex Isolates from the Onion Rhizosphere and Onion Field Soil

(2008) J. L. Jacobs et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The RAST Server: Rapid Annotations using Subsystems Technology

(2008) Ramy K Aziz et al.   BMC GENOMICS