Genome Insights of the Plant-Growth Promoting Bacterium Cronobacter muytjensii JZ38 With Volatile-Mediated Antagonistic Activity Against Phytophthora infestans

Loss of the Two-Component System TctD-TctE in Pseudomonas aeruginosa Affects Biofilm Formation and Aminoglycoside Susceptibility in Response to Citric Acid

(2019) Patrick K. Taylor et al.   mSphere

Microbial hexuronate catabolism in biotechnology

(2019) Joosu Kuivanen et al.   AMB Express

TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy

(2019) Jan P. Meier-Kolthoff et al.   Nature Communications

Bioprospecting desert plant Bacillus endophytic strains for their potential to enhance plant stress tolerance

(2019) Ameerah Bokhari et al.   Scientific Reports

The influence of plant growth-promoting rhizobacteria in plant tolerance to abiotic stress: a survival strategy

(2018) Matthew Chekwube Enebe et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Characterization of the Trehalose Utilization Operon in Streptococcus mutans Reveals that the TreR Transcriptional Regulator Is Involved in Stress Response Pathways and Toxin Production

(2018) J. L. Baker et al.   JOURNAL OF BACTERIOLOGY

Genomic characterization of malonate positive Cronobacter sakazakii serotype O:2, sequence type 64 strains, isolated from clinical, food, and environment samples

(2018) Gopal R. Gopinath et al.   Gut Pathogens

Ethylene induced plant stress tolerance by Enterobacter sp. SA187 is mediated by 2‐keto‐4‐methylthiobutyric acid production

(2018) Axel de Zélicourt et al.   PLoS Genetics

Indole-3-acetaldehyde dehydrogenase-dependent auxin synthesis contributes to virulence of Pseudomonas syringae strain DC3000

(2018) Sheri A. McClerklin et al.   PLoS Pathogens

Regulatory role of the RstB-RstA system in adhesion, biofilm production, motility, and hemolysis

(2018) Lixing Huang et al.   MicrobiologyOpen

Desert plant bacteria reveal host influence and beneficial plant growth properties

(2018) Abdul Aziz Eida et al.   PLoS One

Draft genomes of Cronobacter sakazakii strains isolated from dried spices bring unique insights into the diversity of plant-associated strains

(2018) Hyein Jang et al.   Standards in Genomic Sciences

Phylogenetically diverse endophytic bacteria from desert plants induce transcriptional changes of tissue-specific ion transporters and salinity stress in Arabidopsis thaliana

(2018) Abdul Aziz Eida et al.   PLANT SCIENCE

Zinc solubilizing Bacillus spp. potential candidates for biofortification in maize

(2017) Muhammad Zahid Mumtaz et al.   MICROBIOLOGICAL RESEARCH

STRIDE: Species Tree Root Inference from Gene Duplication Events

(2017) David M Emms et al.   MOLECULAR BIOLOGY AND EVOLUTION

Manganese scavenging and oxidative stress response mediated by type VI secretion system inBurkholderia thailandensis

(2017) Meiru Si et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Contribution of Zinc Solubilizing Bacteria in Growth Promotion and Zinc Content of Wheat

(2017) Sana Kamran et al.   Frontiers in Microbiology

Complete Genome Sequence Analysis of Enterobacter sp. SA187, a Plant Multi-Stress Tolerance Promoting Endophytic Bacterium

(2017) Cristina Andrés-Barrao et al.   Frontiers in Microbiology

Abscisic Acid Signaling and Abiotic Stress Tolerance in Plants: A Review on Current Knowledge and Future Prospects

(2017) Kanchan Vishwakarma et al.   Frontiers in Plant Science

Stability, structural and functional properties of a monomeric, calcium–loaded adenylate cyclase toxin, CyaA, from Bordetella pertussis

(2017) Sara E. Cannella et al.   Scientific Reports

H2S biosynthesis and catabolism: new insights from molecular studies

(2016) Peter Rose et al.   CELLULAR AND MOLECULAR LIFE SCIENCES

Rhizosphere bacteria containing 1-aminocyclopropane-1- carboxylate deaminase increase growth and photosynthesis of pea plants under salt stress by limiting Na+ accumulation

(2016) Qiyuan Wang et al.   FUNCTIONAL PLANT BIOLOGY

Role of theganSPQABOperon in Degradation of Galactan by Bacillus subtilis

(2016) Hildegard Watzlawick et al.   JOURNAL OF BACTERIOLOGY

Genetic Characterization of the Galactitol Utilization Pathway of Salmonella enterica Serovar Typhimurium

(2016) Nicoletta Nolle et al.   JOURNAL OF BACTERIOLOGY

BcsZ inhibits biofilm phenotypes and promotes virulence by blocking cellulose production in Salmonella enterica serovar Typhimurium

(2016) Irfan Ahmad et al.   Microbial Cell Factories

Klebsiella pneumoniae: Going on the Offense with a Strong Defense

(2016) Michelle K. Paczosa et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Editorial: Smelly Fumes: Volatile-Mediated Communication between Bacteria and Other Organisms

(2016) Laure Weisskopf et al.   Frontiers in Microbiology

Volatile-Mediated Effects Predominate in Paraburkholderia phytofirmans Growth Promotion and Salt Stress Tolerance of Arabidopsis thaliana

(2016) Thomas Ledger et al.   Frontiers in Microbiology

A Carotenoid-Deficient Mutant in Pantoea sp. YR343, a Bacteria Isolated from the Rhizosphere of Populus deltoides, Is Defective in Root Colonization

(2016) Amber N. Bible et al.   Frontiers in Microbiology

Next generation of microbial inoculants for agriculture and bioremediation

(2016) Antonino Baez-Rogelio et al.   Microbial Biotechnology

Whole genome analysis of halotolerant and alkalotolerant plant growth-promoting rhizobacterium Klebsiella sp. D5A

(2016) Wuxing Liu et al.   Scientific Reports

Coordination Chemistry of Microbial Iron Transport

(2015) Kenneth N. Raymond et al.   ACCOUNTS OF CHEMICAL RESEARCH

Complex Regulation Pathways of AmpC-Mediated β-Lactam Resistance in Enterobacter cloacae Complex

(2015) François Guérin et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The CreC Regulator of Escherichia coli, a New Target for Metabolic Manipulations

(2015) Manuel S. Godoy et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison

(2015) Michael Richter et al.   BIOINFORMATICS

New insights into the role of siderophores as triggers of plant immunity: what can we learn from animals?

(2015) A. Aznar et al.   JOURNAL OF EXPERIMENTAL BOTANY

Hydrogen sulfide regulates abiotic stress tolerance and biotic stress resistance inArabidopsis

(2015) Haitao Shi et al.   Journal of Integrative Plant Biology

Indole: a signaling molecule or a mere metabolic byproduct that alters bacterial physiology at a high concentration?

(2015) Jisun Kim et al.   JOURNAL OF MICROBIOLOGY

Remaining Mysteries of Molecular Biology: The Role of Polyamines in the Cell

(2015) Leonor Miller-Fleming et al.   JOURNAL OF MOLECULAR BIOLOGY

FastME 2.0: A Comprehensive, Accurate, and Fast Distance-Based Phylogeny Inference Program: Table 1.

(2015) Vincent Lefort et al.   MOLECULAR BIOLOGY AND EVOLUTION

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters

(2015) Tilmann Weber et al.   NUCLEIC ACIDS RESEARCH

Roles of Indole as an Interspecies and Interkingdom Signaling Molecule

(2015) Jin-Hyung Lee et al.   TRENDS IN MICROBIOLOGY

Hydrogen sulfide enhances salt tolerance through nitric oxide-mediated maintenance of ion homeostasis in barley seedling roots

(2015) Juan Chen et al.   Scientific Reports

Type VI Secretion System Transports Zn2+ to Combat Multiple Stresses and Host Immunity

(2015) Tietao Wang et al.   PLoS Pathogens

Establishing a Role for Bacterial Cellulose in Environmental Interactions: Lessons Learned from Diverse Biofilm-Producing Proteobacteria

(2015) Richard V. Augimeri et al.   Frontiers in Microbiology

Volatile Organic Compounds from Native Potato-associated Pseudomonas as Potential Anti-oomycete Agents

(2015) Mout De Vrieze et al.   Frontiers in Microbiology

Bacterial exopolysaccharides: biosynthesis pathways and engineering strategies

(2015) Jochen Schmid et al.   Frontiers in Microbiology

The effects of bacterial volatile emissions on plant abiotic stress tolerance

(2015) Xiao-Min Liu et al.   Frontiers in Plant Science

Hydrogen Sulfide Regulates Salt Tolerance in Rice by Maintaining Na+/K+ Balance, Mineral Homeostasis and Oxidative Metabolism Under Excessive Salt Stress

(2015) Mohammad G. Mostofa et al.   Frontiers in Plant Science

Pseudomonas Strains Naturally Associated with Potato Plants Produce Volatiles with High Potential for Inhibition of Phytophthora infestans

(2014) Lukas Hunziker et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Architecture and assembly of the Type VI secretion system

(2014) Abdelrahim Zoued et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR CELL RESEARCH

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Reactive oxygen species and the bacterial response to lethal stress

(2014) Xilin Zhao et al.   CURRENT OPINION IN MICROBIOLOGY

Regulation of biofilm formation inPseudomonasandBurkholderiaspecies

(2014) Mustafa Fazli et al.   ENVIRONMENTAL MICROBIOLOGY

Evolution of Aromatic β-Glucoside Utilization by Successive Mutational Steps in Escherichia coli

(2014) Parisa Zangoui et al.   JOURNAL OF BACTERIOLOGY

Bacterial Genome Instability

(2014) E. Darmon et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

The inter-kingdom volatile signal indole promotes root development by interfering with auxin signalling

(2014) Aurélien Bailly et al.   PLANT JOURNAL

Single Cell Kinetics of Phenotypic Switching in the Arabinose Utilization System of E. coli

(2014) Georg Fritz et al.   PLoS One

The Symbiotic Biofilm of Sinorhizobium fredii SMH12, Necessary for Successful Colonization and Symbiosis of Glycine max cv Osumi, Is Regulated by Quorum Sensing Systems and Inducing Flavonoids via NodD1

(2014) Francisco Pérez-Montaño et al.   PLoS One

Recombinant expression of glpK and glpD genes improves the accumulation of shikimic acid in E. coli grown on glycerol

(2014) Yang Yang et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Comprehensive Mapping of the Escherichia coli Flagellar Regulatory Network

(2014) Devon M. Fitzgerald et al.   PLoS Genetics

Involvement of toxin-antitoxin modules inBurkholderia cenocepaciabiofilm persistence

(2014) Heleen Van Acker et al.   Pathogens and Disease

Biofilm formation by enteric pathogens and its role in plant colonization and persistence

(2014) Sima Yaron et al.   Microbial Biotechnology

Core Lipopolysaccharide-Specific Phage SSU5 as an Auxiliary Component of a Phage Cocktail for Salmonella Biocontrol

(2013) Minsik Kim et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Infernal 1.1: 100-fold faster RNA homology searches

(2013) E. P. Nawrocki et al.   BIOINFORMATICS

Production of Bioactive Volatiles by Different Burkholderia ambifaria Strains

(2013) Ulrike Groenhagen et al.   JOURNAL OF CHEMICAL ECOLOGY

Indole production by the tryptophanase TnaA in Escherichia coli is determined by the amount of exogenous tryptophan

(2013) G. Li et al.   MICROBIOLOGY-SGM

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

(2013) Chen-Shan Chin et al.   NATURE METHODS

Induced Systemic Resistance and the Rhizosphere Microbiome

(2013) Peter A.H.M. Bakker et al.   Plant Pathology Journal

DendroBLAST: Approximate Phylogenetic Trees in the Absence of Multiple Sequence Alignments

(2013) Steven Kelly et al.   PLoS One

INDIGO – INtegrated Data Warehouse of MIcrobial GenOmes with Examples from the Red Sea Extremophiles

(2013) Intikhab Alam et al.   PLoS One

Hydrogen sulfide is involved in maintaining ion homeostasis via regulating plasma membrane Na+/H+ antiporter system in the hydrogen peroxide-dependent manner in salt-stress Arabidopsis thaliana root

(2013) Jisheng Li et al.   PROTOPLASMA

Comparative genomics and functional analysis of rhamnose catabolic pathways and regulons in bacteria

(2013) Irina A. Rodionova et al.   Frontiers in Microbiology

Diversity and Natural Functions of Antibiotics Produced by Beneficial and Plant Pathogenic Bacteria

(2012) Jos M. Raaijmakers et al.   Annual Review of Phytopathology

Biological Role of Pigment Production for the Bacterial Phytopathogen Pantoea stewartii subsp. stewartii

(2012) Mojtaba Mohammadi et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Regulators of oxidative stress response genes in Escherichia coli and their functional conservation in bacteria

(2012) Sarah M. Chiang et al.   ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS

Novel acid resistance genes from the metagenome of the Tinto River, an extremely acidic environment

(2012) María-Eugenia Guazzaroni et al.   ENVIRONMENTAL MICROBIOLOGY

Transcriptomic analysis of responses to exudates reveal genes required for rhizosphere competence of the endophyteAzoarcussp. strain BH72

(2012) Teja Shidore et al.   ENVIRONMENTAL MICROBIOLOGY

A novel membrane-bound toxin for cell division, CptA (YgfX), inhibits polymerization of cytoskeleton proteins, FtsZ and MreB, in Escherichia coli

(2012) Hisako Masuda et al.   FEMS MICROBIOLOGY LETTERS

Osmotic stress adaptations in rhizobacteria

(2012) Diby Paul   JOURNAL OF BASIC MICROBIOLOGY

ZntR-mediated transcription of zntA responds to nanomolar intracellular free zinc

(2012) Da Wang et al.   JOURNAL OF INORGANIC BIOCHEMISTRY

Complete Genome Sequence of Cronobacter sakazakii Temperate Bacteriophage phiES15

(2012) J.-H. Lee et al.   JOURNAL OF VIROLOGY

Complete Genome Sequence of Bacteriophage SSU5 Specific for Salmonella enterica serovar Typhimurium Rough Strains

(2012) M. Kim et al.   JOURNAL OF VIROLOGY

Novel regulation targets of the metal-response BasS-BasR two-component system of Escherichia coli

(2012) H. Ogasawara et al.   MICROBIOLOGY-SGM

Functional reconstitution and osmoregulatory properties of the ProU ABC transporter fromEscherichia coli

(2012) Nadia Gul et al.   MOLECULAR MEMBRANE BIOLOGY

Role of Trehalose in Salinity and Temperature Tolerance in the Model Halophilic Bacterium Chromohalobacter salexigens

(2012) Mercedes Reina-Bueno et al.   PLoS One

Detection of AI-2 Receptors in Genomes of Enterobacteriaceae Suggests a Role of Type-2 Quorum Sensing in Closed Ecosystems

(2012) Fabio Rezzonico et al.   SENSORS

Galactose Metabolism Plays a Crucial Role in Biofilm Formation by Bacillus subtilis

(2012) Y. Chai et al.   mBio

Increasing drought under global warming in observations and models

(2012) Aiguo Dai   Nature Climate Change

Toxin-Antitoxin Systems in Bacteria and Archaea

(2011) Yoshihiro Yamaguchi et al.   Annual Review of Genetics

Characterization of Putative Virulence Genes on the Related RepFIB Plasmids Harbored by Cronobacter spp.

(2011) A. A. Franco et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Antimicrobial volatile organic compounds affect morphogenesis-related enzymes inGuignardia citricarpa, causal agent of citrus black spot

(2011) Mauricio Batista Fialho et al.   BIOCONTROL SCIENCE AND TECHNOLOGY

Structural and Mechanistic Insights into C-P Bond Hydrolysis by Phosphonoacetate Hydrolase

(2011) Vinayak Agarwal et al.   CHEMISTRY & BIOLOGY

Production of plant growth modulating volatiles is widespread among rhizosphere bacteria and strongly depends on culture conditions

(2011) D. Blom et al.   ENVIRONMENTAL MICROBIOLOGY

Reactive oxygen and oxidative stress tolerance in plant pathogenic Pseudomonas

(2011) Helen Fones et al.   FEMS MICROBIOLOGY LETTERS

Cpa, the Outer Membrane Protease ofCronobacter sakazakii, Activates Plasminogen and Mediates Resistance to Serum Bactericidal Activity

(2011) A. A. Franco et al.   INFECTION AND IMMUNITY

Cronobacter condimenti sp. nov., isolated from spiced meat, and Cronobacter universalis sp. nov., a species designation for Cronobacter sp. genomospecies 1, recovered from a leg infection, water and food ingredients

(2011) S. Joseph et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Characterization of the Induction and Cellular Role of the BaeSR Two-Component Envelope Stress Response of Escherichia coli

(2011) S. K. D. Leblanc et al.   JOURNAL OF BACTERIOLOGY

PHAST: A Fast Phage Search Tool

(2011) Y. Zhou et al.   NUCLEIC ACIDS RESEARCH

Hydrogen sulfide enhances alfalfa (Medicago sativa) tolerance against salinity during seed germination by nitric oxide pathway

(2011) Yanqin Wang et al.   PLANT AND SOIL

Use of Fatty Acid Methyl Ester Profiles for Discrimination of Bacillus cereus T-Strain Spores Grown on Different Media

(2010) C. J. Ehrhardt et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Diverse pathways for salicin utilization in Shigella sonnei and Escherichia coli carrying an impaired bgl operon

(2010) Stuti K. Desai et al.   ARCHIVES OF MICROBIOLOGY

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Type VI Secretion: Not Just for Pathogenesis Anymore

(2010) Andrea J. Jani et al.   Cell Host & Microbe

A Type VI Secretion System of Pseudomonas aeruginosa Targets a Toxin to Bacteria

(2010) Rachel D. Hood et al.   Cell Host & Microbe

Zinc forms in soils (Review of publications)

(2010) Yu. N. Vodyanitskii   EURASIAN SOIL SCIENCE

RmpA Regulation of Capsular Polysaccharide Biosynthesis in Klebsiella pneumoniae CG43

(2010) H. Y. Cheng et al.   JOURNAL OF BACTERIOLOGY

Utilization of Lactose and Galactose by Streptococcus mutans: Transport, Toxicity, and Carbon Catabolite Repression

(2010) L. Zeng et al.   JOURNAL OF BACTERIOLOGY

Identification of two scyllo-inositol dehydrogenases in Bacillus subtilis

(2010) T. Morinaga et al.   MICROBIOLOGY-SGM

TADB: a web-based resource for Type 2 toxin–antitoxin loci in bacteria and archaea

(2010) Yucheng Shao et al.   NUCLEIC ACIDS RESEARCH

Genome Sequence of the Plant Growth Promoting Endophytic Bacterium Enterobacter sp. 638

(2010) Safiyh Taghavi et al.   PLoS Genetics

Role of Gluconic Acid Production in the Regulation of Biocontrol Traits of Pseudomonas fluorescens CHA0

(2009) P. de Werra et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genes Involved in Yellow Pigmentation of Cronobacter sakazakii ES5 and Influence of Pigmentation on Persistence and Growth under Environmental Stress

(2009) S. Johler et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Protein secretion systems in bacterial-host associations, and their description in the Gene Ontology

(2009) Tsai-Tien Tseng et al.   BMC MICROBIOLOGY

Poplar and its Bacterial Endophytes: Coexistence and Harmony

(2009) Daniel van der Lelie et al.   CRITICAL REVIEWS IN PLANT SCIENCES

Type VI secretion modulates quorum sensing and stress response inVibrio anguillarum

(2009) Barbara Weber et al.   ENVIRONMENTAL MICROBIOLOGY

Catabolism of Raffinose, Sucrose, and Melibiose in Erwinia chrysanthemi 3937

(2009) N. Hugouvieux-Cotte-Pattat et al.   JOURNAL OF BACTERIOLOGY

Plant-rhizobacteria interactions alleviate abiotic stress conditions

(2009) CHRISTIAN DIMKPA et al.   PLANT CELL AND ENVIRONMENT

Trehalose Metabolism and Signaling

(2008) Matthew J. Paul et al.   Annual Review of Plant Biology

DNAPlotter: circular and linear interactive genome visualization

(2008) T. Carver et al.   BIOINFORMATICS

Cronobacter gen. nov., a new genus to accommodate the biogroups of Enterobacter sakazakii, and proposal of Cronobacter sakazakii gen. nov., comb. nov., Cronobacter malonaticus sp. nov., Cronobacter turicensis sp. nov., Cronobacter muytjensii sp. nov., Cronobacter dublinensis sp. nov., Cronobacter genomospecies 1, and of three subspecies, Cronobacter dublinensis subsp. dublinensis subsp. nov., Cronobacter dublinensis subsp. lausannensis subsp. nov. and Cronobacter dublinensis subsp. lactaridi subsp. nov.

(2008) C. Iversen et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

rrnDB: documenting the number of rRNA and tRNA genes in bacteria and archaea

(2008) Z. M.-P. Lee et al.   NUCLEIC ACIDS RESEARCH

Properties of bacterial endophytes and their proposed role in plant growth

(2008) Pablo R. Hardoim et al.   TRENDS IN MICROBIOLOGY

Societal Costs of Late Blight in Potato and Prospects of Durable Resistance Through Cisgenic Modification

(2008) A. J. Haverkort et al.   POTATO RESEARCH

Sec- and Tat-mediated protein secretion across the bacterial cytoplasmic membrane—Distinct translocases and mechanisms

(2007) Paolo Natale et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES