Murine polyomavirus DNA transitions through spatially distinct nuclear replication subdomains during infection

PML nuclear body-residing proteins sequentially associate with HPV genome after infectious nuclear delivery

(2019) Lucile Guion et al.   PLoS Pathogens

Viral replication centers and the DNA damage response in JC virus-infected cells

(2019) Kimberly D. Erickson et al.   VIROLOGY

BK polyomavirus activates the DNA damage response to prolong S phase

(2019) Joshua L. Justice et al.   JOURNAL OF VIROLOGY

Evidence for DNA-mediated nuclear compartmentalization distinct from phase separation

(2019) David Trombley McSwiggen et al.   eLife

Formation of adenovirus DNA replication compartments and viral DNA accumulation sites by host chromatin regulatory proteins including NPM1

(2019) Michelle Jane Genoveso et al.   FEBS Journal

Correlation Coefficients

(2018) Patrick Schober et al.   ANESTHESIA AND ANALGESIA

Image co-localization – co-occurrence versus correlation

(2018) Jesse S. Aaron et al.   JOURNAL OF CELL SCIENCE

In vivo labelling of adenovirus DNA identifies chromatin anchoring and biphasic genome replication.

(2018) Tetsuro Komatsu et al.   JOURNAL OF VIROLOGY

Single-molecule localization microscopy reveals molecular transactions during RAD51 filament assembly at cellular DNA damage sites

(2018) Kalina T Haas et al.   NUCLEIC ACIDS RESEARCH

Virus DNA Replication and the Host DNA Damage Response

(2018) Matthew D. Weitzman et al.   Annual Review of Virology

Spatiotemporal dynamics of homologous recombination repair at single collapsed replication forks

(2018) Donna R. Whelan et al.   Nature Communications

DNA replication stress triggers rapid DNA replication fork breakage by Artemis and XPF

(2018) Rémy Bétous et al.   PLoS Genetics

Identifying Host Factors Associated with DNA Replicated During Virus Infection

(2017) Emigdio D. Reyes et al.   MOLECULAR & CELLULAR PROTEOMICS

Replication Catastrophe: When a Checkpoint Fails because of Exhaustion

(2017) Luis Toledo et al.   MOLECULAR CELL

The impact of replication stress on replication dynamics and DNA damage in vertebrate cells

(2017) Hervé Técher et al.   NATURE REVIEWS GENETICS

The essential kinase ATR: ensuring faithful duplication of a challenging genome

(2017) Joshua C. Saldivar et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Take your PIKK: tumour viruses and DNA damage response pathways

(2017) Neha J. Pancholi et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

3D-structured illumination microscopy reveals clustered DNA double-strand break formation in widespread γH2AX foci after high LET heavy-ion particle radiation

(2017) Yoshihiko Hagiwara et al.   Oncotarget

Quantitative Cell Cycle Analysis Based on an Endogenous All-in-One Reporter for Cell Tracking and Classification

(2017) Thomas Zerjatke et al.   Cell Reports

Replication-Coupled Recruitment of Viral and Cellular Factors to Herpes Simplex Virus Type 1 Replication Forks for the Maintenance and Expression of Viral Genomes

(2017) Jill A. Dembowski et al.   PLoS Pathogens

Tracking adenovirus genomes identifies morphologically distinct late DNA replication compartments

(2016) Tetsuro Komatsu et al.   TRAFFIC

Activation of DNA damage repair pathways by murine polyomavirus

(2016) Katie Heiser et al.   VIROLOGY

Discrimination of cell cycle phases in PCNA-immunolabeled cells

(2015) Felix Schönenberger et al.   BMC BIOINFORMATICS

Activation of new replication foci under conditions of replication stress

(2015) P Rybak et al.   CELL CYCLE

Selective Recruitment of Nuclear Factors to Productively Replicating Herpes Simplex Virus Genomes

(2015) Jill A. Dembowski et al.   PLoS Pathogens

Polyomavirus interaction with the DNA damage response

(2015) Joshua L. Justice et al.   VIROLOGICA SINICA

RPA-coated single-stranded DNA as a platform for post-translational modifications in the DNA damage response

(2014) Alexandre Maréchal et al.   CELL RESEARCH

ATR Prohibits Replication Catastrophe by Preventing Global Exhaustion of RPA

(2013) Luis Ignacio Toledo et al.   CELL

Statistical tests for measures of colocalization in biological microscopy

(2013) JOHN H. MCDONALD et al.   JOURNAL OF MICROSCOPY

Viral Interference with DNA Repair by Targeting of the Single-Stranded DNA Binding Protein RPA

(2013) Pubali Banerjee et al.   PLoS Pathogens

Large T Antigens of Polyomaviruses: Amazing Molecular Machines

(2012) Ping An et al.   Annual Review of Microbiology

Human Papillomaviruses Recruit Cellular DNA Repair and Homologous Recombination Factors to Viral Replication Centers

(2012) K. A. Gillespie et al.   JOURNAL OF VIROLOGY

Roles of ATM and ATR-Mediated DNA Damage Responses during Lytic BK Polyomavirus Infection

(2012) Mengxi Jiang et al.   PLoS Pathogens

Virion Assembly Factories in the Nucleus of Polyomavirus-Infected Cells

(2012) Kimberly D. Erickson et al.   PLoS Pathogens

Analysis of protein dynamics at active, stalled, and collapsed replication forks

(2011) B. M. Sirbu et al.   GENES & DEVELOPMENT

Comparisons between Murine Polyomavirus and Simian Virus 40 Show Significant Differences in Small T Antigen Function

(2011) S. Andrabi et al.   JOURNAL OF VIROLOGY

Polyomavirus Middle T-Antigen Is a Transmembrane Protein That Binds Signaling Proteins in Discrete Subcellular Membrane Sites

(2011) A. Y. Zhou et al.   JOURNAL OF VIROLOGY

Human Cytomegalovirus UL44 Concentrates at the Periphery of Replication Compartments, the Site of Viral DNA Synthesis

(2011) B. L. Strang et al.   JOURNAL OF VIROLOGY

Phosphatases in the cellular response to DNA damage

(2010) Alyson K Freeman et al.   Cell Communication and Signaling

Emergence of Micronuclei and Their Effects on the Fate of Cells under Replication Stress

(2010) Koh-ichi Utani et al.   PLoS One

Recruitment of DNA replication and damage response proteins to viral replication centers during infection with NS2 mutants of Minute Virus of Mice (MVM)

(2010) Zandra Ruiz et al.   VIROLOGY

PML Nuclear Bodies

(2010) V. Lallemand-Breitenbach et al.   Cold Spring Harbor Perspectives in Biology

Common mechanisms of PIKK regulation

(2009) Courtney A. Lovejoy et al.   DNA REPAIR

Large T Antigen Promotes JC Virus Replication in G2-arrested Cells by Inducing ATM- and ATR-mediated G2Checkpoint Signaling

(2009) Yasuko Orba et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Lessons in Signaling and Tumorigenesis from Polyomavirus Middle T Antigen

(2009) M. M. Fluck et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Ionizing radiation-dependent and independent phosphorylation of the 32-kDa subunit of replication protein A during mitosis

(2009) Holger Stephan et al.   NUCLEIC ACIDS RESEARCH

Parvovirus Induced Alterations in Nuclear Architecture and Dynamics

(2009) Teemu O. Ihalainen et al.   PLoS One

Inhibition of serine/threonine phosphatase PP2A enhances cancer chemotherapy by blocking DNA damage induced defense mechanisms

(2009) Jie Lu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ataxia Telangiectasia-Mutated Damage-Signaling Kinase- and Proteasome-Dependent Destruction of Mre11-Rad50-Nbs1 Subunits in Simian Virus 40-Infected Primate Cells

(2008) X. Zhao et al.   JOURNAL OF VIROLOGY

SV40 DNA replication: From the A gene to a nanomachine

(2008) Ellen Fanning et al.   VIROLOGY