Robbery in progress: Historical museum collections bring to light a mitochondrial capture within a bird species widespread across southern Australia, the Copperback Quail‐thrush Cinclosoma clarum

A study of faster-Z evolution in the great tit (Parus major)

(2020) Kai Hayes et al.   Genome Biology and Evolution

Insights from genomes into the evolutionary importance and prevalence of hybridization in nature

(2019) Scott A. Taylor et al.   Nature Ecology & Evolution

‘Ghost introgression’ as a cause of deep mitochondrial divergence in a bird species complex

(2019) Dezhi Zhang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Historical DNA as a tool to address key questions in avian biology and evolution: A review of methods, challenges, applications, and future directions

(2019) Shawn M. Billerman et al.   Molecular Ecology Resources

Museum specimens provide reliable SNP data for population genomic analysis of a widely distributed but threatened cockatoo species

(2019) Kyle M. Ewart et al.   Molecular Ecology Resources

Genomic impact of severe population decline in a nomadic songbird

(2019) Ross Crates et al.   PLoS One

Evidence of linked selection on the Z chromosome of hybridizing hummingbirds

(2019) Christopher J. Battey   EVOLUTION

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

dartr : An r package to facilitate analysis of SNP data generated from reduced representation genome sequencing

(2018) Bernd Gruber et al.   Molecular Ecology Resources

Reduced Introgression of Sex Chromosome Markers in the Mexican Howler Monkey (Alouatta palliata × A. pigra) Hybrid Zone

(2018) Liliana Cortés-Ortiz et al.   INTERNATIONAL JOURNAL OF PRIMATOLOGY

Quantifying the relative contributions of the X chromosome, autosomes, and mitochondrial genome to local adaptation

(2018) Clementine Lasne et al.   EVOLUTION

Current geography masks dynamic history of gene flow during speciation in northern Australian birds

(2018) Joshua V. Peñalba et al.   MOLECULAR ECOLOGY

A reassessment of explanations for discordant introgressions of mitochondrial and nuclear genomes

(2017) Timothée Bonnet et al.   EVOLUTION

Avian introgression in the genomic era

(2017) Jente Ottenburghs et al.   Avian Research

Multi-locus sequence data illuminate demographic drivers of Pleistocene speciation in semi-arid southern Australian birds (Cinclosoma spp.)

(2016) Gaynor Dolman et al.   BMC EVOLUTIONARY BIOLOGY

Plumage Genes and Little Else Distinguish the Genomes of Hybridizing Warblers

(2016) David P.L. Toews et al.   CURRENT BIOLOGY

pophelper: an R package and web app to analyse and visualize population structure

(2016) R. M. Francis   Molecular Ecology Resources

Shedding Light on the Grey Zone of Speciation along a Continuum of Genomic Divergence

(2016) Camille Roux et al.   PLOS BIOLOGY

Evolutionary history of birds across southern Australia: structure, history and taxonomic implications of mitochondrial DNA diversity in an ecologically diverse suite of species

(2015) Gaynor Dolman et al.   EMU

The tempo of trait divergence in geographic isolation: Avian speciation across the Marañon Valley of Peru

(2015) Benjamin M. Winger et al.   EVOLUTION

The Avian Hybrids Project: gathering the scientific literature on avian hybridization

(2015) Jente Ottenburghs et al.   IBIS

Clumpak : a program for identifying clustering modes and packaging population structure inferences across K

(2015) Naama M. Kopelman et al.   Molecular Ecology Resources

Effects of Asymmetric Nuclear Introgression, Introgressive Mitochondrial Sweep, and Purifying Selection on Phylogenetic Reconstruction and Divergence Estimates in the Pacific Clade of Locustella Warblers

(2015) Sergei V. Drovetski et al.   PLoS One

MIGRATION, MITOCHONDRIA, AND THE YELLOW-RUMPED WARBLER

(2013) David P. L. Toews et al.   EVOLUTION

Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach

(2013) Christoph Hahn et al.   NUCLEIC ACIDS RESEARCH

Development of DArT Marker Platforms and Genetic Diversity Assessment of the U.S. Collection of the New Oilseed Crop Lesquerella and Related Species

(2013) Von Mark V. Cruz et al.   PLoS One

Genome-Wide Association Mapping of Root Traits in a Japonica Rice Panel

(2013) Brigitte Courtois et al.   PLoS One

The biogeography of mitochondrial and nuclear discordance in animals

(2012) DAVID P. L. TOEWS et al.   MOLECULAR ECOLOGY

Genetic Introgression: An Integral but neglected component of speciation in birds

(2011) Frank E. Rheindt et al.   AUK

Evolution of arid zone birds in Australia: Leapfrog distribution patterns and mesic-arid connections in quail-thrush (Cinclosoma, Cinclosomatidae)

(2011) Alicia Toon et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

The genome of a songbird

(2010) Wesley C. Warren et al.   NATURE

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Removal of deaminated cytosines and detection of in vivo methylation in ancient DNA

(2009) Adrian W. Briggs et al.   NUCLEIC ACIDS RESEARCH

Gene flow and species delimitation

(2009) Rémy J. Petit et al.   TRENDS IN ECOLOGY & EVOLUTION

THE HIDDEN SIDE OF INVASIONS: MASSIVE INTROGRESSION BY LOCAL GENES

(2008) Mathias Currat et al.   EVOLUTION

The Population Genetics of dN/dS

(2008) Sergey Kryazhimskiy et al.   PLoS Genetics