dartr : An r package to facilitate analysis of SNP data generated from reduced representation genome sequencing

Genome-wide data delimits multiple climate-determined species ranges in a widespread Australian fish, the golden perch ( Macquaria ambigua )

(2017) Luciano B. Beheregaray et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Genome-wide SNPs resolve a key conflict between sequence and allozyme data to confirm another threatened candidate species of river blackfishes (Teleostei: Percichthyidae: Gadopsis )

(2017) Peter J. Unmack et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Riverscape genomics of a threatened fish across a hydroclimatically heterogeneous river basin

(2016) Chris J. Brauer et al.   MOLECULAR ECOLOGY

Linking genomics and population genetics with R

(2016) Emmanuel Paradis et al.   Molecular Ecology Resources

Harnessing the power of RADseq for ecological and evolutionary genomics

(2016) Kimberly R. Andrews et al.   NATURE REVIEWS GENETICS

Environmental adaptation in Chinook salmon (Oncorhynchus tshawytscha) throughout their North American range

(2015) Benjamin C. Hecht et al.   MOLECULAR ECOLOGY

Neutral and adaptive genomic signatures of rapid poleward range expansion

(2015) J. Swaegers et al.   MOLECULAR ECOLOGY

The relative power of genome scans to detect local adaptation depends on sampling design and statistical method

(2015) Katie E. Lotterhos et al.   MOLECULAR ECOLOGY

landgenreport : a new r function to simplify landscape genetic analysis using resistance surface layers

(2015) Bernd Gruber et al.   Molecular Ecology Resources

Big Data: Astronomical or Genomical?

(2015) Zachary D. Stephens et al.   PLOS BIOLOGY

fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets

(2014) Anil Raj et al.   GENETICS

PopGenReport: simplifying basic population genetic analyses in R

(2014) Aaron T. Adamack et al.   Methods in Ecology and Evolution

Genomic dissection of variation in clutch size and egg mass in a wild great tit (Parus major) population

(2013) Anna W. Santure et al.   MOLECULAR ECOLOGY

mmod: an R library for the calculation of population differentiation statistics

(2012) David J. Winter   Molecular Ecology Resources

Double Digest RADseq: An Inexpensive Method for De Novo SNP Discovery and Genotyping in Model and Non-Model Species

(2012) Brant K. Peterson et al.   PLoS One

adegenet 1.3-1: new tools for the analysis of genome-wide SNP data

(2011) Thibaut Jombart et al.   BIOINFORMATICS

Genome-wide association mapping identifies the genetic basis of discrete and quantitative variation in sexual weaponry in a wild sheep population

(2011) SUSAN E. JOHNSTON et al.   MOLECULAR ECOLOGY

A comparison of SNP and STR loci for delineating population structure and performing individual genetic assignment

(2010) Kevin A Glover et al.   BMC GENETICS

Detecting loci under selection in a hierarchically structured population

(2009) L Excoffier et al.   HEREDITY

Assessing statistical power of SNPs for population structure and conservation studies

(2009) PHILLIP A. MORIN et al.   Molecular Ecology Resources

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

SNP discovery and allele frequency estimation by deep sequencing of reduced representation libraries

(2008) Curtis P Van Tassell et al.   NATURE METHODS

Rapid SNP Discovery and Genetic Mapping Using Sequenced RAD Markers

(2008) Nathan A. Baird et al.   PLoS One