Genome-Wide Association Mapping of Root Traits in a Japonica Rice Panel

Soil conditions and cereal root system architecture: review and considerations for linking Darwin and Weaver

(2013) Sarah M. Rich et al.   JOURNAL OF EXPERIMENTAL BOTANY

Control of root system architecture by DEEPER ROOTING 1 increases rice yield under drought conditions

(2013) Yusaku Uga et al.   NATURE GENETICS

Genetic control of nodal root angle in sorghum and its implications on water extraction

(2012) Vijaya Singh et al.   EUROPEAN JOURNAL OF AGRONOMY

The protein kinase Pstol1 from traditional rice confers tolerance of phosphorus deficiency

(2012) Rico Gamuyao et al.   NATURE

A map of rice genome variation reveals the origin of cultivated rice

(2012) Xuehui Huang et al.   NATURE

An efficient multi-locus mixed-model approach for genome-wide association studies in structured populations

(2012) Vincent Segura et al.   NATURE GENETICS

A mixed-model approach for genome-wide association studies of correlated traits in structured populations

(2012) Arthur Korte et al.   NATURE GENETICS

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

High-throughput two-dimensional root system phenotyping platform facilitates genetic analysis of root growth and development

(2012) RANDY T. CLARK et al.   PLANT CELL AND ENVIRONMENT

Root biology and genetic improvement for drought avoidance in rice

(2011) Veeresh R.P. Gowda et al.   FIELD CROPS RESEARCH

Resequencing 50 accessions of cultivated and wild rice yields markers for identifying agronomically important genes

(2011) Xun Xu et al.   NATURE BIOTECHNOLOGY

Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm

(2011) Xuehui Huang et al.   NATURE GENETICS

FaST linear mixed models for genome-wide association studies

(2011) Christoph Lippert et al.   NATURE METHODS

A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species

(2011) Robert J. Elshire et al.   PLoS One

Phenomics – technologies to relieve the phenotyping bottleneck

(2011) Robert T. Furbank et al.   TRENDS IN PLANT SCIENCE

Genome-wide association mapping reveals a rich genetic architecture of complex traits in Oryza sativa

(2011) Keyan Zhao et al.   Nature Communications

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations

(2010) Thibaut Jombart et al.   BMC GENETICS

Variance component model to account for sample structure in genome-wide association studies

(2010) Hyun Min Kang et al.   NATURE GENETICS

Genome-wide association studies of 14 agronomic traits in rice landraces

(2010) Xuehui Huang et al.   NATURE GENETICS

Shovelomics: high throughput phenotyping of maize (Zea mays L.) root architecture in the field

(2010) Samuel Trachsel et al.   PLANT AND SOIL

A Glutathione S-Transferase Regulated by Light and Hormones Participates in the Modulation of Arabidopsis Seedling Development

(2010) H.-W. Jiang et al.   PLANT PHYSIOLOGY

Imaging and Analysis Platform for Automatic Phenotyping and Trait Ranking of Plant Root Systems

(2010) A. S. Iyer-Pascuzzi et al.   PLANT PHYSIOLOGY

Development of a Research Platform for Dissecting Phenotype–Genotype Associations in Rice (Oryza spp.)

(2010) Chih-Wei Tung et al.   Rice

SNP deserts of Asian cultivated rice: genomic regions under domestication

(2009) L. WANG et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

High-Throughput Quantification of Root Growth Using a Novel Image-Analysis Tool

(2009) A. French et al.   PLANT PHYSIOLOGY

ER-resident proteins PDR2 and LPR1 mediate the developmental response of root meristems to phosphate availability

(2009) C. A. Ticconi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rice Root Genetic Architecture: Meta-analysis from a Drought QTL Database

(2009) Brigitte Courtois et al.   Rice

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

adegenet: a R package for the multivariate analysis of genetic markers

(2008) Thibaut Jombart   BIOINFORMATICS

Next-generation genetics in plants

(2008) Magnus Nordborg et al.   NATURE