Mapping mesoscale axonal projections in the mouse brain using a 3D convolutional network

Temporal evolution of cortical ensembles promoting remote memory retrieval

(2019) Laura A. DeNardo et al.   NATURE NEUROSCIENCE

Regulation of Energy Expenditure by Brainstem GABA Neurons

(2019) Marc Schneeberger et al.   CELL

A whole-brain map of long-range inputs to GABAergic interneurons in the mouse medial prefrontal cortex

(2019) Qingtao Sun et al.   NATURE NEUROSCIENCE

Reconstruction of 1,000 Projection Neurons Reveals New Cell Types and Organization of Long-Range Connectivity in the Mouse Brain

(2019) Johan Winnubst et al.   CELL

TeraVR empowers precise reconstruction of complete 3-D neuronal morphology in the whole brain

(2019) Yimin Wang et al.   Nature Communications

Single-cell transcriptomes and whole-brain projections of serotonin neurons in the mouse dorsal and median raphe nuclei

(2019) Jing Ren et al.   eLife

Three-Dimensional Adipose Tissue Imaging Reveals Regional Variation in Beige Fat Biogenesis and PRDM16-Dependent Sympathetic Neurite Density

(2018) Jingyi Chi et al.   Cell Metabolism

Genetic Dissection of Neural Circuits: A Decade of Progress

(2018) Liqun Luo et al.   NEURON

Observing the cell in its native state: Imaging subcellular dynamics in multicellular organisms

(2018) Tsung-Li Liu et al.   SCIENCE

Anatomically Defined and Functionally Distinct Dorsal Raphe Serotonin Sub-systems

(2018) Jing Ren et al.   CELL

Molecular Diversity and Specializations among the Cells of the Adult Mouse Brain

(2018) Arpiar Saunders et al.   CELL

Molecular Architecture of the Mouse Nervous System

(2018) Amit Zeisel et al.   CELL

Whole-Brain Vasculature Reconstruction at the Single Capillary Level

(2018) Antonino Paolo Di Giovanna et al.   Scientific Reports

Shared and distinct transcriptomic cell types across neocortical areas

(2018) Bosiljka Tasic et al.   NATURE

U-Net: deep learning for cell counting, detection, and morphometry

(2018) Thorsten Falk et al.   NATURE METHODS

A beginner’s guide to tissue clearing

(2017) Pablo Ariel   INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY

Automating cell detection and classification in human brain fluorescent microscopy images using dictionary learning and sparse coding

(2017) Maryana Alegro et al.   JOURNAL OF NEUROSCIENCE METHODS

An interactive framework for whole-brain maps at cellular resolution

(2017) Daniel Fürth et al.   NATURE NEUROSCIENCE

Mapping of Brain Activity by Automated Volume Analysis of Immediate Early Genes

(2016) Nicolas Renier et al.   CELL

Shrinkage-mediated imaging of entire organs and organisms using uDISCO

(2016) Chenchen Pan et al.   NATURE METHODS

Robust and automated three-dimensional segmentation of densely packed cell nuclei in different biological specimens with Lines-of-Sight decomposition

(2015) B. Mathew et al.   BMC BIOINFORMATICS

Clarifying Tissue Clearing

(2015) Douglas S. Richardson et al.   CELL

Viral-genetic tracing of the input–output organization of a central noradrenaline circuit

(2015) Lindsay A. Schwarz et al.   NATURE

NeuroGPS-Tree: automatic reconstruction of large-scale neuronal populations with dense neurites

(2015) Tingwei Quan et al.   NATURE METHODS

Swept confocally-aligned planar excitation (SCAPE) microscopy for high-speed volumetric imaging of behaving organisms

(2015) Matthew B. Bouchard et al.   Nature Photonics

Dopamine neurons projecting to the posterior striatum form an anatomically distinct subclass

(2015) William Menegas et al.   eLife

Large-scale automated identification of mouse brain cells in confocal light sheet microscopy images

(2014) Paolo Frasconi et al.   BIOINFORMATICS

Neural Networks of the Mouse Neocortex

(2014) Brian Zingg et al.   CELL

A mesoscale connectome of the mouse brain

(2014) Seung Wook Oh et al.   NATURE

Structural and molecular interrogation of intact biological systems

(2013) Kwanghun Chung et al.   NATURE

A GAL4-Driver Line Resource for Drosophila Neurobiology

(2012) Arnim Jenett et al.   Cell Reports

Three-Dimensional Reconstruction of Brain-wide Wiring Networks in Drosophila at Single-Cell Resolution

(2010) Ann-Shyn Chiang et al.   CURRENT BIOLOGY

V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets

(2010) Hanchuan Peng et al.   NATURE BIOTECHNOLOGY