NeuroGPS-Tree: automatic reconstruction of large-scale neuronal populations with dense neurites

SPIN: A Method of Skeleton-Based Polarity Identification for Neurons

(2014) Yi-Hsuan Lee et al.   NEUROINFORMATICS

Rapid Reconstruction of 3D Neuronal Morphology from Light Microscopy Images with Augmented Rayburst Sampling

(2014) Xing Ming et al.   PLoS One

Active learning of neuron morphology for accurate automated tracing of neurites

(2014) Rohan Gala et al.   Frontiers in Neuroanatomy

Mapping brain circuitry with a light microscope

(2013) Pavel Osten et al.   NATURE METHODS

NeuroGPS: automated localization of neurons for brain circuits using L1 minimization model

(2013) Tingwei Quan et al.   Scientific Reports

Computational methods and challenges for large-scale circuit mapping

(2012) Moritz Helmstaedter et al.   CURRENT OPINION IN NEUROBIOLOGY

Serial two-photon tomography for automated ex vivo mouse brain imaging

(2012) Timothy Ragan et al.   NATURE METHODS

Confocal light sheet microscopy: micron-scale neuroanatomy of the entire mouse brain

(2012) L. Silvestri et al.   OPTICS EXPRESS

High-accuracy neurite reconstruction for high-throughput neuroanatomy

(2011) Moritz Helmstaedter et al.   NATURE NEUROSCIENCE

Principal Curves as Skeletons of Tubular Objects

(2011) Erhan Bas et al.   NEUROINFORMATICS

The DIADEM Data Sets: Representative Light Microscopy Images of Neuronal Morphology to Advance Automation of Digital Reconstructions

(2011) Kerry M. Brown et al.   NEUROINFORMATICS

A Broadly Applicable 3-D Neuron Tracing Method Based on Open-Curve Snake

(2011) Yu Wang et al.   NEUROINFORMATICS

Automated Reconstruction of Neuronal Morphology Based on Local Geometrical and Global Structural Models

(2011) Ting Zhao et al.   NEUROINFORMATICS

Automated Reconstruction of Dendritic and Axonal Trees by Global Optimization with Geometric Priors

(2011) Engin Türetken et al.   NEUROINFORMATICS

Automated Tracing of Neurites from Light Microscopy Stacks of Images

(2011) Paarth Chothani et al.   NEUROINFORMATICS

The DIADEM Metric: Comparing Multiple Reconstructions of the Same Neuron

(2011) Todd A. Gillette et al.   NEUROINFORMATICS

The Big and the Small: Challenges of Imaging the Brain's Circuits

(2011) J. W. Lichtman et al.   SCIENCE

Automated reconstruction of neuronal morphology: An overview

(2010) Duncan E. Donohue et al.   BRAIN RESEARCH REVIEWS

Neuron tracing in perspective

(2010) Erik Meijering   CYTOMETRY PART A

V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets

(2010) Hanchuan Peng et al.   NATURE BIOTECHNOLOGY

Micro-Optical Sectioning Tomography to Obtain a High-Resolution Atlas of the Mouse Brain

(2010) A. Li et al.   SCIENCE