Large-scale automated identification of mouse brain cells in confocal light sheet microscopy images

A mesoscale connectome of the mouse brain

(2014) Seung Wook Oh et al.   NATURE

Extensible visualization and analysis for multidimensional images using Vaa3D

(2014) Hanchuan Peng et al.   Nature Protocols

TeraStitcher - A tool for fast automatic 3D-stitching of teravoxel-sized microscopy images

(2013) Alessandro Bria et al.   BMC BIOINFORMATICS

Unsupervised segmentation of noisy electron microscopy images using salient watersheds and region merging

(2013) Saket Navlakha et al.   BMC BIOINFORMATICS

An automatic method for robust and fast cell detection in bright field images from high-throughput microscopy

(2013) Felix Buggenthin et al.   BMC BIOINFORMATICS

Structural and molecular interrogation of intact biological systems

(2013) Kwanghun Chung et al.   NATURE

Mapping brain circuitry with a light microscope

(2013) Pavel Osten et al.   NATURE METHODS

Continuously tracing brain-wide long-distance axonal projections in mice at a one-micron voxel resolution

(2013) Hui Gong et al.   NEUROIMAGE

3D segmentations of neuronal nuclei from confocal microscope image stacks

(2013) Antonio LaTorre et al.   Frontiers in Neuroanatomy

NeuroGPS: automated localization of neurons for brain circuits using L1 minimization model

(2013) Tingwei Quan et al.   Scientific Reports

Serial two-photon tomography for automated ex vivo mouse brain imaging

(2012) Timothy Ragan et al.   NATURE METHODS

Confocal light sheet microscopy: micron-scale neuroanatomy of the entire mouse brain

(2012) L. Silvestri et al.   OPTICS EXPRESS

Chemical Clearing and Dehydration of GFP Expressing Mouse Brains

(2012) Klaus Becker et al.   PLoS One

Light sheet microscopy of living or cleared specimens

(2011) Philipp J Keller et al.   CURRENT OPINION IN NEUROBIOLOGY

Volume electron microscopy for neuronal circuit reconstruction

(2011) Kevin L Briggman et al.   CURRENT OPINION IN NEUROBIOLOGY

Large-Scale Automated Histology in the Pursuit of Connectomes

(2011) D. Kleinfeld et al.   JOURNAL OF NEUROSCIENCE

Wiring specificity in the direction-selectivity circuit of the retina

(2011) Kevin L. Briggman et al.   NATURE

High-accuracy neurite reconstruction for high-throughput neuroanatomy

(2011) Moritz Helmstaedter et al.   NATURE NEUROSCIENCE

The Big and the Small: Challenges of Imaging the Brain's Circuits

(2011) J. W. Lichtman et al.   SCIENCE

V3D enables real-time 3D visualization and quantitative analysis of large-scale biological image data sets

(2010) Hanchuan Peng et al.   NATURE BIOTECHNOLOGY

DeadEasy Mito-Glia: Automatic Counting of Mitotic Cells and Glial Cells in Drosophila

(2010) Manuel Guillermo Forero et al.   PLoS One

Micro-Optical Sectioning Tomography to Obtain a High-Resolution Atlas of the Mouse Brain

(2010) A. Li et al.   SCIENCE

Interactions between neuroactive steroids and reelin haploinsufficiency in Purkinje cell survival

(2009) Filippo Biamonte et al.   NEUROBIOLOGY OF DISEASE

A Proposal for a Coordinated Effort for the Determination of Brainwide Neuroanatomical Connectivity in Model Organisms at a Mesoscopic Scale

(2009) Jason W. Bohland et al.   PLoS Computational Biology

Knife-edge scanning microscopy for imaging and reconstruction of three-dimensional anatomical structures of the mouse brain

(2008) D. MAYERICH et al.   JOURNAL OF MICROSCOPY

Serial Section Scanning Electron Microscopy of Adult Brain Tissue Using Focused Ion Beam Milling

(2008) G. Knott et al.   JOURNAL OF NEUROSCIENCE