Robust and automated three-dimensional segmentation of densely packed cell nuclei in different biological specimens with Lines-of-Sight decomposition

Light-sheet fluorescence microscopy for quantitative biology

(2015) Ernst H K Stelzer   NATURE METHODS

Non-invasive long-term fluorescence live imaging of Tribolium castaneum embryos

(2014) F. Strobl et al.   DEVELOPMENT

Improved and Robust Detection of Cell Nuclei from Four Dimensional Fluorescence Images

(2014) Md. Khayrul Bashar et al.   PLoS One

A Rapid and Efficient 2D/3D Nuclear Segmentation Method for Analysis of Early Mouse Embryo and Stem Cell Image Data

(2014) Xinghua Lou et al.   Stem Cell Reports

Integrated profiling of three dimensional cell culture models and 3D microscopy

(2013) Cemal Cagatay Bilgin et al.   BIOINFORMATICS

TANGO: a generic tool for high-throughput 3D image analysis for studying nuclear organization

(2013) Jean Ollion et al.   BIOINFORMATICS

Region-based progressive localization of cell nuclei in microscopic images with data adaptive modeling

(2013) Yang Song et al.   BMC BIOINFORMATICS

A novel cell nuclei segmentation method for 3D C. elegans embryonic time-lapse images

(2013) Long Chen et al.   BMC BIOINFORMATICS

Weak Convex Decomposition by Lines-of-sight

(2013) Shmuel Asafi et al.   COMPUTER GRAPHICS FORUM

Anatomy of a blastocyst: Cell behaviors driving cell fate choice and morphogenesis in the early mouse embryo

(2013) Nadine Schrode et al.   GENESIS

Spline-Based Deforming Ellipsoids for Interactive 3D Bioimage Segmentation

(2013) Ricard Delgado-Gonzalo et al.   IEEE TRANSACTIONS ON IMAGE PROCESSING

Dense nuclei segmentation based on graph cut and convexity-concavity analysis

(2013) J. QI   JOURNAL OF MICROSCOPY

3D segmentations of neuronal nuclei from confocal microscope image stacks

(2013) Antonio LaTorre et al.   Frontiers in Neuroanatomy

Biological imaging software tools

(2012) Kevin W Eliceiri et al.   NATURE METHODS

An automatic segmentation algorithm for 3D cell cluster splitting using volumetric confocal images

(2011) C. INDHUMATHI et al.   JOURNAL OF MICROSCOPY

Why don't we get more cancer? A proposed role of the microenvironment in restraining cancer progression

(2011) Mina J Bissell et al.   NATURE MEDICINE

A novel segmentation algorithm for clustered slender-particles

(2009) Qufa Zhong et al.   COMPUTERS AND ELECTRONICS IN AGRICULTURE

Quantitative in vivo imaging of entire embryos with Digital Scanned Laser Light Sheet Fluorescence Microscopy

(2009) Philipp J Keller et al.   CURRENT OPINION IN NEUROBIOLOGY

Improved Automatic Detection and Segmentation of Cell Nuclei in Histopathology Images

(2009) Y. Al-Kofahi et al.   IEEE TRANSACTIONS ON BIOMEDICAL ENGINEERING

Cells Segmentation From 3-D Confocal Images of Early Zebrafish Embryogenesis

(2009) C. Zanella et al.   IEEE TRANSACTIONS ON IMAGE PROCESSING

Nuclear Imaging of Cancer Cell Therapies

(2009) V. Ponomarev   JOURNAL OF NUCLEAR MEDICINE

Matrix mechanics and receptor–ligand interactions in cell adhesion

(2009) Dewi Harjanto et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

Splitting touching cells based on concave points and ellipse fitting

(2009) Xiangzhi Bai et al.   PATTERN RECOGNITION

Hierarchical Convex Approximation of 3D Shapes for Fast Region Selection

(2008) Marco Attene et al.   COMPUTER GRAPHICS FORUM

Analysis and recognition of touching cell images based on morphological structures

(2008) Donggang Yu et al.   COMPUTERS IN BIOLOGY AND MEDICINE

Reconstruction of Zebrafish Early Embryonic Development by Scanned Light Sheet Microscopy

(2008) P. J. Keller et al.   SCIENCE