Three‐dimensional genetic networks among seed oil‐related traits, metabolites and genes reveal the genetic foundations of oil synthesis in soybean

PLDα1-knockdown soybean seeds display higher unsaturated glycerolipid contents and seed vigor in high temperature and humidity environments

(2019) Gaoyang Zhang et al.   Biotechnology for Biofuels

Genome-Wide Association Studies for Pasmo Resistance in Flax (Linum usitatissimum L.)

(2019) Liqiang He et al.   Frontiers in Plant Science

Editorial: The Applications of New Multi-Locus GWAS Methodologies in the Genetic Dissection of Complex Traits

(2019) Yuan-Ming Zhang et al.   Frontiers in Plant Science

Effect of marker segregation distortion on high density linkage map construction and QTL mapping in Soybean (Glycine max L.)

(2019) Jian-Fang Zuo et al.   HEREDITY

Comparative analysis of metabolome of rice seeds at three developmental stages using a recombinant inbred line population

(2019) Kang Li et al.   PLANT JOURNAL

Artificial selection on GmOLEO1 contributes to the increase in seed oil during soybean domestication

(2019) Dan Zhang et al.   PLoS Genetics

A Combined Linkage and GWAS Analysis Identifies QTLs Linked to Soybean Seed Protein and Oil Content

(2019) Tengfei Zhang et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Regulation of glucose and lipid metabolism in health and disease

(2019) Ligong Chen et al.   Science China-Life Sciences

Tuning of acyl-ACP thioesterase activity directed for tailored fatty acid synthesis

(2018) Yanbin Feng et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The complex allosteric and redox regulation of the fumarate hydratase and malate dehydratase reactions of Arabidopsis thaliana Fumarase 1 and 2 gives clues for understanding the massive accumulation of fumarate

(2018) Juan P. Zubimendi et al.   FEBS Journal

Mapping the Arabidopsis Metabolic Landscape by Untargeted Metabolomics at Different Environmental Conditions

(2018) Si Wu et al.   Molecular Plant

Malate valves: Old shuttles with new perspectives

(2018) Jennifer Selinski et al.   PLANT BIOLOGY

Bradyrhizobium diazoefficiens USDA 110–Glycine max Interactome Provides Candidate Proteins Associated with Symbiosis

(2018) Li Zhang et al.   JOURNAL OF PROTEOME RESEARCH

Genome-Wide Association Studies for Dynamic Plant Height and Number of Nodes on the Main Stem in Summer Sowing Soybeans

(2018) Fangguo Chang et al.   Frontiers in Plant Science

Genome-Wide Association Mapping of Starch Pasting Properties in Maize Using Single-Locus and Multi-Locus Models

(2018) Yang Xu et al.   Frontiers in Plant Science

An integrated omics analysis reveals molecular mechanisms that are associated with differences in seed oil content between Glycine max and Brassica napus

(2018) Zhibin Zhang et al.   BMC PLANT BIOLOGY

pKWmEB: integration of Kruskal–Wallis test with empirical Bayes under polygenic background control for multi-locus genome-wide association study

(2017) Wen-Long Ren et al.   HEREDITY

pLARmEB: integration of least angle regression with empirical Bayes for multilocus genome-wide association studies

(2017) J Zhang et al.   HEREDITY

Meta-Analyses of QTLs Associated with Protein and Oil Contents and Compositions in Soybean [Glycine max (L.) Merr.] Seed

(2017) Kyujung Van et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Molecular cloning and characterization of two β-ketoacyl-acyl carrier protein synthase I genes from Jatropha curcas L.

(2017) Wangdan Xiong et al.   JOURNAL OF PLANT PHYSIOLOGY

Soybean (Glycine max) WRINKLED1 transcription factor, GmWRI1a, positively regulates seed oil accumulation

(2017) Liang Chen et al.   MOLECULAR GENETICS AND GENOMICS

Plasticity and innovation of regulatory mechanisms underlying seed oil content mediated by duplicated genes in the palaeopolyploid soybean

(2017) Dajian Zhang et al.   PLANT JOURNAL

Acyl-CoA:Lysophosphatidylethanolamine Acyltransferase Activity Regulates Growth of Arabidopsis

(2017) Katarzyna Jasieniecka-Gazarkiewicz et al.   PLANT PHYSIOLOGY

Selection for a Zinc-Finger Protein Contributes to Seed Oil Increase during Soybean Domestication

(2017) Qing-Tian Li et al.   PLANT PHYSIOLOGY

Molecular mapping and genomics of soybean seed protein: a review and perspective for the future

(2017) Gunvant Patil et al.   THEORETICAL AND APPLIED GENETICS

Plant Phospholipid Diversity: Emerging Functions in Metabolism and Protein–Lipid Interactions

(2017) Yuki Nakamura   TRENDS IN PLANT SCIENCE

Protein-protein interactions and metabolite channelling in the plant tricarboxylic acid cycle

(2017) Youjun Zhang et al.   Nature Communications

Iterative sure independence screening EM-Bayesian LASSO algorithm for multi-locus genome-wide association studies

(2017) Cox Lwaka Tamba et al.   PLoS Computational Biology

Soybean LEC2 Regulates Subsets of Genes Involved in Controlling the Biosynthesis and Catabolism of Seed Storage Substances and Seed Development

(2017) Sehrish Manan et al.   Frontiers in Plant Science

The transcriptomic signature of developing soybean seeds reveals the genetic basis of seed trait adaptation during domestication

(2016) Xiang Lu et al.   PLANT JOURNAL

An Integrated Bioinformatics Analysis Reveals Divergent Evolutionary Pattern of Oil Biosynthesis in High- and Low-Oil Plants

(2016) Li Zhang et al.   PLoS One

Increasing seed size and quality by manipulatingBIG SEEDS1in legume species

(2016) Liangfa Ge et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Detecting the QTL-allele system of seed isoflavone content in Chinese soybean landrace population for optimal cross design and gene system exploration

(2016) Shan Meng et al.   THEORETICAL AND APPLIED GENETICS

Comparative and parallel genome-wide association studies for metabolic and agronomic traits in cereals

(2016) Wei Chen et al.   Nature Communications

Identification and Validation of Candidate Genes Associated with Domesticated and Improved Traits in Soybean

(2016) Ling Zhou et al.   Plant Genome

PEPIS: A Pipeline for Estimating Epistatic Effects in Quantitative Trait Locus Mapping and Genome-Wide Association Studies

(2016) Wenchao Zhang et al.   PLoS Computational Biology

Improving power and accuracy of genome-wide association studies via a multi-locus mixed linear model methodology

(2016) Shi-Bo Wang et al.   Scientific Reports

Two types of soybean diacylglycerol acyltransferases are differentially involved in triacylglycerol biosynthesis and response to environmental stresses and hormones

(2016) BeiBei Chen et al.   Scientific Reports

Soybean GmDREBL Increases Lipid Content in Seeds of Transgenic Arabidopsis

(2016) Yu-Qin Zhang et al.   Scientific Reports

Transient plant transformation mediated by Agrobacterium tumefaciens: Principles, methods and applications

(2015) Pavel Krenek et al.   BIOTECHNOLOGY ADVANCES

Spatiotemporal Distribution of Phenolamides and the Genetics of Natural Variation of Hydroxycinnamoyl Spermidine in Rice

(2015) Xuekui Dong et al.   Molecular Plant

Genetic Determinants of the Network of Primary Metabolism and Their Relationships to Plant Performance in a Maize Recombinant Inbred Line Population

(2015) Weiwei Wen et al.   PLANT CELL

QTL for seed protein and amino acids in the Benning × Danbaekkong soybean population

(2015) C. V. Warrington et al.   THEORETICAL AND APPLIED GENETICS

Generation of mutant threonine dehydratase and its effects on isoleucine synthesis in Corynebacterium glutamicum

(2015) Yanfeng Guo et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

Identification of domestication-related loci associated with flowering time and seed size in soybean with the RAD-seq genotyping method

(2015) Ling Zhou et al.   Scientific Reports

Expanding Omics Resources for Improvement of Soybean Seed Composition Traits

(2015) Juhi Chaudhary et al.   Frontiers in Plant Science

Mass spectrometry characterisation of fatty acids from metabolically engineered soybean seeds

(2014) André M. Murad et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

A genome-wide association study of seed protein and oil content in soybean

(2014) Eun-Young Hwang et al.   BMC GENOMICS

Soybean GmMYB73 promotes lipid accumulation in transgenic plants

(2014) Yun-Feng Liu et al.   BMC PLANT BIOLOGY

Investigation of the contribution of oil biosynthetic enzymes to seed oil content in Brassica napus and Arabidopsis thaliana

(2014) Vesna Katavic et al.   CANADIAN JOURNAL OF PLANT SCIENCE

Phosphatidylglycerol biosynthesis is required for the development of embryos and normal membrane structures of chloroplasts and mitochondria inArabidopsis

(2014) Ryo Tanoue et al.   FEBS LETTERS

fastSTRUCTURE: Variational Inference of Population Structure in Large SNP Data Sets

(2014) Anil Raj et al.   GENETICS

Evolution and association analysis of GmCYP78A10 gene with seed size/weight and pod number in soybean

(2014) Xiaobo Wang et al.   MOLECULAR BIOLOGY REPORTS

Genome-wide association analyses provide genetic and biochemical insights into natural variation in rice metabolism

(2014) Wei Chen et al.   NATURE GENETICS

Δ1-pyrroline-5-carboxylate reductase fromArabidopsis thaliana: stimulation or inhibition by chloride ions and feedback regulation by proline depend on whether NADPH or NADH acts as co-substrate

(2014) Samuele Giberti et al.   NEW PHYTOLOGIST

Genome-Wide Association in Tomato Reveals 44 Candidate Loci for Fruit Metabolic Traits

(2014) C. Sauvage et al.   PLANT PHYSIOLOGY

Identification of a Pair of Phospholipid:Diacylglycerol Acyltransferases from Developing Flax ( Linum usitatissimum L.) Seed Catalyzing the Selective Production of Trilinolenin

(2013) Xue Pan et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Soybean GmbZIP123 gene enhances lipid content in the seeds of transgenic Arabidopsis plants

(2013) Q.-X. Song et al.   JOURNAL OF EXPERIMENTAL BOTANY

Extraplastidial cytidinediphosphate diacylglycerol synthase activity is required for vegetative development inArabidopsis thaliana

(2013) Yonghong Zhou et al.   PLANT JOURNAL

Phospholipid:diacylglycerol acyltransferase-mediated triacylglycerol biosynthesis is crucial for protection against fatty acid-induced cell death in growing tissues of Arabidopsis

(2013) Jilian Fan et al.   PLANT JOURNAL

The Patatin-Containing Phospholipase A pPLAIIα Modulates Oxylipin Formation and Water Loss in Arabidopsis thaliana

(2012) Wen-Yu Yang et al.   Molecular Plant

Genome-wide efficient mixed-model analysis for association studies

(2012) Xiang Zhou et al.   NATURE GENETICS

A travel guide to Cytoscape plugins

(2012) Rintaro Saito et al.   NATURE METHODS

Characterization of Arabidopsis serine:glyoxylate aminotransferase, AGT1, as an asparagine aminotransferase

(2012) Qianyi Zhang et al.   PHYTOCHEMISTRY

Succinate dehydrogenase assembly factor 2 is needed for assembly and activity of mitochondrial complex II and for normal root elongation in Arabidopsis

(2012) Shaobai Huang et al.   PLANT JOURNAL

Genomic analysis of phospholipase D family and characterization of GmPLDαs in soybean (Glycine max)

(2011) Jiangzhe Zhao et al.   JOURNAL OF PLANT RESEARCH

Reduced expression of FatA thioesterases in Arabidopsis affects the oil content and fatty acid composition of the seeds

(2011) Antonio J. Moreno-Pérez et al.   PLANTA

Nearly unbiased variable selection under minimax concave penalty

(2010) Cun-Hui Zhang   ANNALS OF STATISTICS

Oil-Body-Membrane Proteins and Their Physiological Functions in Plants

(2010) Takashi L. Shimada et al.   BIOLOGICAL & PHARMACEUTICAL BULLETIN

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

TheArabidopsisPatatin-Like Protein 2 (PLP2) Plays an Essential Role in Cell Death Execution and Differentially Affects Biosynthesis of Oxylipins and Resistance to Pathogens

(2009) Sylvain La Camera et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

DGAT1 and PDAT1 Acyltransferases Have Overlapping Functions in Arabidopsis Triacylglycerol Biosynthesis and Are Essential for Normal Pollen and Seed Development

(2009) M. Zhang et al.   PLANT CELL

ArabidopsisCER8encodes LONG-CHAIN ACYL-COA SYNTHETASE 1 (LACS1) that has overlapping functions with LACS2 in plant wax and cutin synthesis

(2009) Shiyou Lü et al.   PLANT JOURNAL

Mapping and quantifying mammalian transcriptomes by RNA-Seq

(2008) Ali Mortazavi et al.   NATURE METHODS

STRING 8--a global view on proteins and their functional interactions in 630 organisms

(2008) L. J. Jensen et al.   NUCLEIC ACIDS RESEARCH

Expression of Umbelopsis ramanniana DGAT2A in Seed Increases Oil in Soybean

(2008) K. Lardizabal et al.   PLANT PHYSIOLOGY