Identification and Removal of Contaminant Sequences From Ribosomal Gene Databases: Lessons From the Census of Deep Life

Nitrogen Cycling of Active Bacteria within Oligotrophic Sediment of the Mid-Atlantic Ridge Flank

(2018) Brandi Kiel Reese et al.   GEOMICROBIOLOGY JOURNAL

The growing tree of Archaea: new perspectives on their diversity, evolution and ecology

(2017) Panagiotis S Adam et al.   ISME Journal

A simple and inexpensive technique for assessing contamination during drilling operations

(2017) André Friese et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

The Source and Evolutionary History of a Microbial Contaminant Identified Through Soil Metagenomic Analysis

(2017) Matthew R. Olm et al.   mBio

Influence of Igneous Basement on Deep Sediment Microbial Diversity on the Eastern Juan de Fuca Ridge Flank

(2017) Jessica M. Labonté et al.   Frontiers in Microbiology

Are Oligotypes Meaningful Ecological and Phylogenetic Units? A Case Study of Microcystis in Freshwater Lakes

(2017) Michelle A. Berry et al.   Frontiers in Microbiology

Fossil DNA persistence and decay in marine sediment over hundred-thousand-year to million-year time scales

(2016) John B. Kirkpatrick et al.   GEOLOGY

Microbial Inventory of Deeply Buried Oceanic Crust from a Young Ridge Flank

(2016) Steffen L. Jørgensen et al.   Frontiers in Microbiology

Species Richness and Adaptation of Marine Fungi from Deep-Subseafloor Sediments

(2015) Vanessa Rédou et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Exploring deep microbial life in coal-bearing sediment down to  2.5 km below the ocean floor

(2015) F. Inagaki et al.   SCIENCE

VAMPS: a website for visualization and analysis of microbial population structures

(2014) Susan M Huse et al.   BMC BIOINFORMATICS

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

A large volume particulate and water multi-sampler with in situ preservation for microbial and biogeochemical studies

(2014) J.A. Breier et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

Common Contaminants in Next-Generation Sequencing That Hinder Discovery of Low-Abundance Microbes

(2014) Martin Laurence et al.   PLoS One

Physiological and genomic features of highly alkaliphilic hydrogen-utilizing Betaproteobacteria from a continental serpentinizing site

(2014) Shino Suzuki et al.   Nature Communications

Trends and future challenges in sampling the deep terrestrial biosphere

(2014) Michael J. Wilkins et al.   Frontiers in Microbiology

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Sewage reflects the distribution of human faecalLachnospiraceae

(2013) Sandra L. McLellan et al.   ENVIRONMENTAL MICROBIOLOGY

Gene expression in the deep biosphere

(2013) William D. Orsi et al.   NATURE

Deep Sequencing of Subseafloor Eukaryotic rRNA Reveals Active Fungi across Marine Subsurface Provinces

(2013) William Orsi et al.   PLoS One

Serpentinization, Carbon, and Deep Life

(2013) M. O. Schrenk et al.   Reviews in Mineralogy & Geochemistry

Oligotyping: differentiating between closely related microbial taxa using 16S rRNA gene data

(2013) A. Murat Eren et al.   Methods in Ecology and Evolution

Molecular quantification of environmental DNA using microfluidics and digital PCR

(2012) Tatsuhiko Hoshino et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Metagenomic Evidence for H2 Oxidation and H2 Production by Serpentinite-Hosted Subsurface Microbial Communities

(2012) William J. Brazelton et al.   Frontiers in Microbiology

Aseptic Laboratory Techniques: Plating Methods

(2012) Erin R. Sanders   Jove-Journal of Visualized Experiments

Influence of the Drilling Mud Formulation Process on the Bacterial Communities in Thermogenic Natural Gas Wells of the Barnett Shale

(2011) Christopher G. Struchtemeyer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Bacterial communities associated with hydraulic fracturing fluids in thermogenic natural gas wells in North Central Texas, USA

(2011) Christopher G. Struchtemeyer et al.   FEMS MICROBIOLOGY ECOLOGY

Isolation and characterization of tetrachloroethylene- and cis-1,2-dichloroethylene-dechlorinating propionibacteria

(2011) Young-Cheol Chang et al.   JOURNAL OF INDUSTRIAL MICROBIOLOGY & BIOTECHNOLOGY

Bayesian community-wide culture-independent microbial source tracking

(2011) Dan Knights et al.   NATURE METHODS

Marine subsurface eukaryotes: the fungal majority

(2010) Virginia P. Edgcomb et al.   ENVIRONMENTAL MICROBIOLOGY

Examining the global distribution of dominant archaeal populations in soil

(2010) Scott T Bates et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY