Novel microbial assemblages inhabiting crustal fluids within mid-ocean ridge flank subsurface basalt

Presence of oxygen and aerobic communities from sea floor to basement in deep-sea sediments

(2015) Steven D’Hondt et al.   Nature Geoscience

Activity and phylogenetic diversity of sulfate-reducing microorganisms in low-temperature subsurface fluids within the upper oceanic crust

(2015) Alberto Robador et al.   Frontiers in Microbiology

Dissolved hydrogen and methane in the oceanic basaltic biosphere

(2014) Huei-Ting Lin et al.   EARTH AND PLANETARY SCIENCE LETTERS

Phylogenetic diversity of microorganisms in subseafloor crustal fluids from Holes 1025C and 1026B along the Juan de Fuca Ridge flank

(2014) Sean P. Jungbluth et al.   Frontiers in Microbiology

Insights into the phylogeny and coding potential of microbial dark matter

(2013) Christian Rinke et al.   NATURE

A Filtering Method to Generate High Quality Short Reads Using Illumina Paired-End Technology

(2013) A. Murat Eren et al.   PLoS One

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Evidence for Microbial Carbon and Sulfur Cycling in Deeply Buried Ridge Flank Basalt

(2013) M. A. Lever et al.   SCIENCE

Oxygen consumption rates in subseafloor basaltic crust derived from a reaction transport model

(2013) Beth N. Orcutt et al.   Nature Communications

EMPeror: a tool for visualizing high-throughput microbial community data

(2013) Yoshiki Vázquez-Baeza et al.   GigaScience

Inorganic chemistry, gas compositions and dissolved organic carbon in fluids from sedimented young basaltic crust on the Juan de Fuca Ridge flanks

(2012) Huei-Ting Lin et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Microbial diversity within basement fluids of the sediment-buried Juan de Fuca Ridge flank

(2012) Sean P Jungbluth et al.   ISME Journal

Archaea of the Miscellaneous Crenarchaeotal Group are abundant, diverse and widespread in marine sediments

(2012) Kyoko Kubo et al.   ISME Journal

Global distribution of microbial abundance and biomass in subseafloor sediment

(2012) J. Kallmeyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Deep Subsurface Biosphere in Igneous Ocean Crust: Frontier Habitats for Microbiological Exploration

(2012) Katrina J. Edwards et al.   Frontiers in Microbiology

Advanced instrument system for real-time and time-series microbial geochemical sampling of the deep (basaltic) crustal biosphere

(2011) James P. Cowen et al.   DEEP-SEA RESEARCH PART I-OCEANOGRAPHIC RESEARCH PAPERS

In situ enrichment of ocean crust microbes on igneous minerals and glasses using an osmotic flow-through device

(2011) Amy Smith et al.   GEOCHEMISTRY GEOPHYSICS GEOSYSTEMS

Seamounts as Conduits for Massive Fluid, Heat, and Solute Fluxes on Ridge Flanks

(2011) Andrew Fisher et al.   OCEANOGRAPHY

Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean

(2011) B. K. Swan et al.   SCIENCE

Subseafloor seawater-basalt-microbe reactions: Continuous sampling of borehole fluids in a ridge flank environment

(2010) C. Geoffrey Wheat et al.   GEOCHEMISTRY GEOPHYSICS GEOSYSTEMS

Colonization of subsurface microbial observatories deployed in young ocean crust

(2010) Beth N Orcutt et al.   ISME Journal

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Thermodesulfovibrio aggregans sp. nov. and Thermodesulfovibrio thiophilus sp. nov., anaerobic, thermophilic, sulfate-reducing bacteria isolated from thermophilic methanogenic sludge, and emended description of the genus Thermodesulfovibrio

(2008) Y. Sekiguchi et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY