Viable cyanobacteria in the deep continental subsurface

Active microbial biofilms in deep poor porous continental subsurface rocks

(2018) Cristina Escudero et al.   Scientific Reports

metaSPAdes: a new versatile metagenomic assembler

(2017) Sergey Nurk et al.   GENOME RESEARCH

Microbial community assembly and evolution in subseafloor sediment

(2017) Piotr Starnawski et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The deep, hot biosphere: Twenty-five years of retrospection

(2017) Daniel R. Colman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Towards clarifying what distinguishes cyanobacteria able to resurrect after desiccation from those that cannot: The photosynthetic aspect

(2016) Hagai Raanan et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

The electron transfer pathway upon H 2 oxidation by the NiFe bidirectional hydrogenase of Synechocystis sp. PCC 6803 in the light shares components with the photosynthetic electron transfer chain in thylakoid membranes

(2016) Ipsita Dutta et al.   INTERNATIONAL JOURNAL OF HYDROGEN ENERGY

Connectivity to the surface determines diversity patterns in subsurface aquifers of the Fennoscandian shield

(2016) Valerie Hubalek et al.   ISME Journal

Reconstructing a hydrogen-driven microbial metabolic network in Opalinus Clay rock

(2016) Alexandre Bagnoud et al.   Nature Communications

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

A novel conceptual approach to read-filtering in high-throughput amplicon sequencing studies

(2015) Fernando Puente-Sánchez et al.   NUCLEIC ACIDS RESEARCH

Biological soil crusts accelerate the nitrogen cycle through large NO and HONO emissions in drylands

(2015) Bettina Weber et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

[NiFe]-hydrogenase is essential for cyanobacterium Synechocystis sp. PCC 6803 aerobic growth in the dark

(2015) Edith De Rosa et al.   Scientific Reports

Identification of the subsurface sulfide bodies responsible for acidity in Río Tinto source water, Spain

(2014) David Gómez-Ortiz et al.   EARTH AND PLANETARY SCIENCE LETTERS

Interpreting 16S metagenomic data without clustering to achieve sub-OTU resolution

(2014) Mikhail Tikhonov et al.   ISME Journal

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Trends and future challenges in sampling the deep terrestrial biosphere

(2014) Michael J. Wilkins et al.   Frontiers in Microbiology

Meta-Analysis of Quantification Methods Shows that Archaea and Bacteria Have Similar Abundances in the Subseafloor

(2013) Karen G. Lloyd et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Comparing the anterior nare bacterial community of two discrete human populations using Illumina amplicon sequencing

(2013) Amélia Camarinha-Silva et al.   ENVIRONMENTAL MICROBIOLOGY

Weighing the deep continental biosphere

(2013) Sean McMahon et al.   FEMS MICROBIOLOGY ECOLOGY

Deep subsurface sulfate reduction and methanogenesis in the Iberian Pyrite Belt revealed through geochemistry and molecular biomarkers

(2013) F. Puente-Sánchez et al.   Geobiology

High rates of denitrification and nitrous oxide emission in arid biological soil crusts from the Sultanate of Oman

(2013) Raeid M M Abed et al.   ISME Journal

Dynamic cyanobacterial response to hydration and dehydration in a desert biological soil crust

(2013) Lara Rajeev et al.   ISME Journal

The Uptake Hydrogenase in the Unicellular Diazotrophic Cyanobacterium Cyanothece sp. Strain PCC 7822 Protects Nitrogenase from Oxygen Toxicity

(2013) X. Zhang et al.   JOURNAL OF BACTERIOLOGY

Microbial life under extreme energy limitation

(2013) Tori M. Hoehler et al.   NATURE REVIEWS MICROBIOLOGY

The Deep, Dark Energy Biosphere: Intraterrestrial Life on Earth

(2012) Katrina J. Edwards et al.   Annual Review of Earth and Planetary Sciences

SINA: Accurate high-throughput multiple sequence alignment of ribosomal RNA genes

(2012) Elmar Pruesse et al.   BIOINFORMATICS

Sensitive life detection strategies for low-biomass environments: optimizing extraction of nucleic acids adsorbing to terrestrial and Mars analogue minerals

(2012) Susana O.L. Direito et al.   FEMS MICROBIOLOGY ECOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Global distribution of microbial abundance and biomass in subseafloor sediment

(2012) J. Kallmeyer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Role of the photosynthetic electron transfer chain in electrogenic activity of cyanobacteria

(2011) John M. Pisciotta et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

A Microbial Oasis in the Hypersaline Atacama Subsurface Discovered by a Life Detector Chip: Implications for the Search for Life on Mars

(2011) Victor Parro et al.   ASTROBIOLOGY

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

In-depth Characterization via Complementing Culture-Independent Approaches of the Microbial Community in an Acidic Hot Spring of the Colombian Andes

(2011) Laura C. Bohorquez et al.   MICROBIAL ECOLOGY

Decontamination of MDA Reagents for Single Cell Whole Genome Amplification

(2011) Tanja Woyke et al.   PLoS One

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Microbial and Mineralogical Characterizations of Soils Collected from the Deep Biosphere of the Former Homestake Gold Mine, South Dakota

(2010) Gurdeep Rastogi et al.   MICROBIAL ECOLOGY

The ecological coherence of high bacterial taxonomic ranks

(2010) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Underground Habitats in the Río Tinto Basin: A Model for Subsurface Life Habitats on Mars

(2008) David C. Fernández-Remolar et al.   ASTROBIOLOGY

The metagenomics RAST server – a public resource for the automatic phylogenetic and functional analysis of metagenomes

(2008) F Meyer et al.   BMC BIOINFORMATICS