A Diversified Dietary Pattern Is Associated With a Balanced Gut Microbial Composition of Faecalibacterium and Escherichia/Shigella in Patients With Crohn’s Disease in Remission

The Role of Dietary Nutrients in Inflammatory Bowel Disease

(2019) Kohei Sugihara et al.   Frontiers in Immunology

The Short Chain Fatty Acid Butyrate Imprints an Antimicrobial Program in Macrophages

(2019) Julie Schulthess et al.   IMMUNITY

Escherichia coli Pathobionts Associated with Inflammatory Bowel Disease

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Metabolic engineering of Escherichia coli for the production of butyric acid at high titer and productivity

(2019) Liang Wang et al.   Biotechnology for Biofuels

Effectiveness of Interventions and Behaviour Change Techniques for Improving Dietary Intake in Young Adults: A Systematic Review and Meta-Analysis of RCTs

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Dietary quality and the colonic mucosa–associated gut microbiome in humans

(2019) Yanhong Liu et al.   AMERICAN JOURNAL OF CLINICAL NUTRITION

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

Dietary Factors and Modulation of Bacteria Strains of Akkermansia muciniphila and Faecalibacterium prausnitzii: A Systematic Review

(2019) Sanne Verhoog et al.   Nutrients

Crohn’s Disease Exclusion Diet Plus Partial Enteral Nutrition Induces Sustained Remission in a Randomized Controlled Trial

(2019) Arie Levine et al.   GASTROENTEROLOGY

Correlation of diet, microbiota and metabolite networks in inflammatory bowel disease

(2019) Yi Jie Weng et al.   Journal of Digestive Diseases

Diet–microbiota interactions and personalized nutrition

(2019) Aleksandra A. Kolodziejczyk et al.   NATURE REVIEWS MICROBIOLOGY

A high-sugar diet rapidly enhances susceptibility to colitis via depletion of luminal short-chain fatty acids in mice

(2019) Michael Laffin et al.   Scientific Reports

Dietary inflammatory index and all-cause mortality in large cohorts: The SUN and PREDIMED studies

(2018) Ana Garcia-Arellano et al.   CLINICAL NUTRITION

In vitro co-cultures of human gut bacterial species as predicted from co-occurrence network analysis

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Inter-niche and inter-individual variation in gut microbial community assessment using stool, rectal swab, and mucosal samples

(2018) Roshonda B. Jones et al.   Scientific Reports

Environment dominates over host genetics in shaping human gut microbiota

(2018) Daphna Rothschild et al.   NATURE

The Gut Microbiota in the Pathogenesis and Therapeutics of Inflammatory Bowel Disease

(2018) Tao Zuo et al.   Frontiers in Microbiology

Integrated culturing, modeling and transcriptomics uncovers complex interactions and emergent behavior in a three-species synthetic gut community

(2018) Kevin D'hoe et al.   eLife

Gut microbiota functions: metabolism of nutrients and other food components

(2017) Ian Rowland et al.   EUROPEAN JOURNAL OF NUTRITION

A microbial signature for Crohn's disease

(2017) Victoria Pascal et al.   GUT

Worldwide incidence and prevalence of inflammatory bowel disease in the 21st century: a systematic review of population-based studies

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A role for bacterial urease in gut dysbiosis and Crohn’s disease

(2017) Josephine Ni et al.   Science Translational Medicine

The Impact of Exclusive Enteral Nutrition (EEN) on the Gut Microbiome in Crohn’s Disease: A Review

(2017) Amber MacLellan et al.   Nutrients

Telehealth methods to deliver dietary interventions in adults with chronic disease: a systematic review and meta-analysis

(2016) Jaimon T Kelly et al.   AMERICAN JOURNAL OF CLINICAL NUTRITION

From Dietary Fiber to Host Physiology: Short-Chain Fatty Acids as Key Bacterial Metabolites

(2016) Ara Koh et al.   CELL

Enteral feeding reduces metabolic activity of the intestinal microbiome in Crohn’s disease: an observational study

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DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Western diet induces a shift in microbiota composition enhancing susceptibility to Adherent-Invasive E. coli infection and intestinal inflammation.

(2016) Allison Agus et al.   Scientific Reports

Personalized Nutrition by Prediction of Glycemic Responses

(2015) David Zeevi et al.   CELL

Definition of the Mediterranean Diet; A Literature Review

(2015) Courtney Davis et al.   Nutrients

The gut microbiota, bacterial metabolites and colorectal cancer

(2014) Petra Louis et al.   NATURE REVIEWS MICROBIOLOGY

The Effects of the Mediterranean Diet on Biomarkers of Vascular Wall Inflammation and Plaque Vulnerability in Subjects with High Risk for Cardiovascular Disease. A Randomized Trial

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Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

The Microbial Metabolites, Short-Chain Fatty Acids, Regulate Colonic Treg Cell Homeostasis

(2013) P. M. Smith et al.   SCIENCE

Diet-Induced Alterations of Host Cholesterol Metabolism Are Likely To Affect the Gut Microbiota Composition in Hamsters

(2012) Inés Martínez et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Dysbiosis of the faecal microbiota in patients with Crohn's disease and their unaffected relatives

(2011) M. Joossens et al.   GUT

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

(2011) G. D. Wu et al.   SCIENCE

Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa

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Diversity, metabolism and microbial ecology of butyrate-producing bacteria from the human large intestine

(2009) Petra Louis et al.   FEMS MICROBIOLOGY LETTERS

Low counts of Faecalibacterium prausnitzii in colitis microbiota

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Twin studies reveal specific imbalances in the mucosa-associated microbiota of patients with ileal Crohnʼs disease

(2008) Ben Willing et al.   INFLAMMATORY BOWEL DISEASES

Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients

(2008) H. Sokol et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Active Crohnʼs disease and ulcerative colitis can be specifically diagnosed and monitored based on the biostructure of the fecal flora

(2007) Alexander Swidsinski et al.   INFLAMMATORY BOWEL DISEASES