Dietary quality and the colonic mucosa–associated gut microbiome in humans

Integration of microbiology, molecular pathology, and epidemiology: a new paradigm to explore the pathogenesis of microbiome-driven neoplasms

(2019) Tsuyoshi Hamada et al.   JOURNAL OF PATHOLOGY

Host and Microbiome Genome-Wide Association Studies: Current State and Challenges

(2019) Denis Awany et al.   Frontiers in Genetics

Interrogating the microbiome: experimental and computational considerations in support of study reproducibility

(2018) Carine Poussin et al.   DRUG DISCOVERY TODAY

The Western Diet–Microbiome-Host Interaction and Its Role in Metabolic Disease

(2018) Marit Zinöcker et al.   Nutrients

Inter-niche and inter-individual variation in gut microbial community assessment using stool, rectal swab, and mucosal samples

(2018) Roshonda B. Jones et al.   Scientific Reports

Use of dietary indices to control for diet in human gut microbiota studies

(2018) Ruth C. E. Bowyer et al.   Microbiome

Progress of analytical tools and techniques for human gut microbiome research

(2018) Eun-Ji Song et al.   JOURNAL OF MICROBIOLOGY

Roseburia spp.: a marker of health?

(2017) Zohreh Tamanai-Shacoori et al.   Future Microbiology

Assessment of variation in microbial community amplicon sequencing by the Microbiome Quality Control (MBQC) project consortium

(2017) Rashmi Sinha et al.   NATURE BIOTECHNOLOGY

Diet quality is associated with reduced incidence of cancer and self-reported chronic disease: Observations from Alberta's Tomorrow Project

(2017) Nathan M. Solbak et al.   PREVENTIVE MEDICINE

Evaluation of the reproducibility of amplicon sequencing with Illumina MiSeq platform

(2017) Chongqing Wen et al.   PLoS One

Genetic Determinants of the Gut Microbiome in UK Twins

(2016) Julia K. Goodrich et al.   Cell Host & Microbe

NKT Cell–Deficient Mice Harbor an Altered Microbiota That Fuels Intestinal Inflammation during Chemically Induced Colitis

(2016) Thirumahal Selvanantham et al.   JOURNAL OF IMMUNOLOGY

Diet–microbiota interactions as moderators of human metabolism

(2016) Justin L. Sonnenburg et al.   NATURE

Akkermansia muciniphila Adheres to Enterocytes and Strengthens the Integrity of the Epithelial Cell Layer

(2015) Justus Reunanen et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The gut microbiota and host health: a new clinical frontier

(2015) Julian R Marchesi et al.   GUT

Fat, fibre and cancer risk in African Americans and rural Africans

(2015) Stephen J. D. O’Keefe et al.   Nature Communications

Akkermansia muciniphila inversely correlates with the onset of inflammation, altered adipose tissue metabolism and metabolic disorders during obesity in mice

(2015) Marc Schneeberger et al.   Scientific Reports

Fecal microbiota imbalance in Mexican children with type 1 diabetes

(2014) María Esther Mejía-León et al.   Scientific Reports

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fusobacterium nucleatum Promotes Colorectal Carcinogenesis by Modulating E-Cadherin/β-Catenin Signaling via its FadA Adhesin

(2013) Mara Roxana Rubinstein et al.   Cell Host & Microbe

Index-based Dietary Patterns and Risk of Esophageal and Gastric Cancer in a Large Cohort Study

(2013) Wen–Qing Li et al.   Clinical Gastroenterology and Hepatology

Effect of lactic fermentation on the total phenolic, saponin and phytic acid contents as well as anti-colon cancer cell proliferation activity of soymilk

(2013) Li-Ru Lai et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

The role of short-chain fatty acids in the interplay between diet, gut microbiota, and host energy metabolism

(2013) Gijs den Besten et al.   JOURNAL OF LIPID RESEARCH

The Healthy Eating Index 2005 and Risk for Pancreatic Cancer in the NIH-AARP Study

(2013) H. Arem et al.   JNCI-Journal of the National Cancer Institute

Diet rapidly and reproducibly alters the human gut microbiome

(2013) Lawrence A. David et al.   NATURE

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Update of the Healthy Eating Index: HEI-2010

(2013) Patricia M. Guenther et al.   Journal of the Academy of Nutrition and Dietetics

Health and Health Behavior Differences

(2012) Katherine D. Hoerster et al.   AMERICAN JOURNAL OF PREVENTIVE MEDICINE

Fusobacterium nucleatum infection is prevalent in human colorectal carcinoma

(2011) M. Castellarin et al.   GENOME RESEARCH

Invasive potential of gut mucosa-derived fusobacterium nucleatum positively correlates with IBD status of the host

(2011) Jaclyn Strauss et al.   INFLAMMATORY BOWEL DISEASES

Linking Long-Term Dietary Patterns with Gut Microbial Enterotypes

(2011) G. D. Wu et al.   SCIENCE

Bacterial biogeography of the human digestive tract

(2011) Jennifer C. Stearns et al.   Scientific Reports

Moving pictures of the human microbiome

(2011) J Gregory Caporaso et al.   GENOME BIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Molecular pathological epidemiology of colorectal neoplasia: an emerging transdisciplinary and interdisciplinary field

(2010) S. Ogino et al.   GUT

UniFrac: an effective distance metric for microbial community comparison

(2010) Catherine Lozupone et al.   ISME Journal

Diet Index-Based and Empirically Derived Dietary Patterns Are Associated with Colorectal Cancer Risk

(2010) Paige E. Miller et al.   JOURNAL OF NUTRITION

Probiotic potential of lactic acid bacteria isolated from fermented dairy milks on antiproliferation of colon cancer cells

(2009) Mongkol Thirabunyanon et al.   BIOTECHNOLOGY LETTERS

Antigen-presenting cells exposed to Lactobacillus acidophilus NCFM, Bifidobacterium bifidum BI-98, and BI-504 reduce regulatory T cell activity

(2009) Esben Gjerlff Wedebye Schmidt et al.   INFLAMMATORY BOWEL DISEASES

Development of the Healthy Eating Index-2005

(2008) Patricia M. Guenther et al.   JOURNAL OF THE AMERICAN DIETETIC ASSOCIATION