The effect of 16S rRNA region choice on bacterial community metabarcoding results

Selection of validated hypervariable regions is crucial in 16S-based microbiota studies of the female genital tract

(2018) Simon Graspeuntner et al.   Scientific Reports

Gut microbiome of juvenile coregonid fishes: comparison of sympatric species and their F1 hybrids

(2017) NataliaL. Belkova et al.   Fundamental and Applied Limnology

Comparison of bacterial diversity and species composition in three endemic Baikalian sponges

(2016) Eun-Young Seo et al.   ANNALES DE LIMNOLOGIE-INTERNATIONAL JOURNAL OF LIMNOLOGY

Sensitivity and correlation of hypervariable regions in 16S rRNA genes in phylogenetic analysis

(2016) Bo Yang et al.   BMC BIOINFORMATICS

The Ability of Microbial Community of Lake Baikal Bottom Sediments Associated with Gas Discharge to Carry Out the Transformation of Organic Matter under Thermobaric Conditions

(2016) Sergei V. Bukin et al.   Frontiers in Microbiology

Bacterial communities in sediments of Lake Baikal from areas with oil and gas discharge

(2015) TI Zemskaya et al.   AQUATIC MICROBIAL ECOLOGY

Similarity of structure of taxonomic bacterial communities in the photic layer of Lake Baikal’s three basins differing in spring phytoplankton composition and abundance

(2015) I. S. Mikhailov et al.   Doklady Biochemistry and Biophysics

Cautionary tale of using 16S rRNA gene sequence similarity values in identification of human-associated bacterial species

(2015) Morgane Rossi-Tamisier et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Sub-Ice Microalgal and Bacterial Communities in Freshwater Lake Baikal, Russia

(2015) Maria V. Bashenkhaeva et al.   MICROBIAL ECOLOGY

An improved nonparametric lower bound of species richness via a modified good-turing frequency formula

(2014) Chun-Huo Chiu et al.   BIOMETRICS

Microbial communities of the discharge zone of oil- and gas-bearing fluids in low-mineral Lake Baikal

(2014) A. V. Lomakina et al.   MICROBIOLOGY

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metagenomic 16S rDNA Illumina tags are a powerful alternative to amplicon sequencing to explore diversity and structure of microbial communities

(2013) Ramiro Logares et al.   ENVIRONMENTAL MICROBIOLOGY

Comparative analysis of biodiversity in the planktonic and biofilm bacterial communities in Lake Baikal

(2013) V. V. Parfenova et al.   MICROBIOLOGY

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Microbial community structure in methane hydrate-bearing sediments of freshwater Lake Baikal

(2011) Vitaly V. Kadnikov et al.   FEMS MICROBIOLOGY ECOLOGY

A Guide to the Natural History of Freshwater Lake Bacteria

(2011) R. J. Newton et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Analysis of 16S rRNA Amplicon Sequencing Options on the Roche/454 Next-Generation Titanium Sequencing Platform

(2011) Hideyuki Tamaki et al.   PLoS One

pegas: an R package for population genetics with an integrated-modular approach

(2010) E. Paradis   BIOINFORMATICS

Evaluation of different partial 16S rRNA gene sequence regions for phylogenetic analysis of microbiomes

(2010) Minseok Kim et al.   JOURNAL OF MICROBIOLOGICAL METHODS

Comparison of two next-generation sequencing technologies for resolving highly complex microbiota composition using tandem variable 16S rRNA gene regions

(2010) Marcus J. Claesson et al.   NUCLEIC ACIDS RESEARCH

Permutation P-values Should Never Be Zero: Calculating Exact P-values When Permutations Are Randomly Drawn

(2010) Belinda Phipson et al.   Statistical Applications in Genetics and Molecular Biology

Metagenomic Pyrosequencing and Microbial Identification

(2009) J. F. Petrosino et al.   CLINICAL CHEMISTRY

Microbial community profiling for human microbiome projects: Tools, techniques, and challenges

(2009) M. Hamady et al.   GENOME RESEARCH

Conservative Fragments in Bacterial 16S rRNA Genes and Primer Design for 16S Ribosomal DNA Amplicons in Metagenomic Studies

(2009) Yong Wang et al.   PLoS One

A renaissance for the pioneering 16S rRNA gene

(2008) Susannah G Tringe et al.   CURRENT OPINION IN MICROBIOLOGY