Whole-genome sequencing of Puccinia striiformis f. sp. tritici mutant isolates identifies avirulence gene candidates

A novel fungal effector from Puccinia graminis suppressing RNA silencing and plant defense responses

(2019) Chuntao Yin et al.   NEW PHYTOLOGIST

Ethyl-methanesulfonate mutagenesis generated diverse isolates of Puccinia striiformis f. sp. tritici, the wheat stripe rust pathogen

(2019) Yuxiang Li et al.   WORLD JOURNAL OF MICROBIOLOGY & BIOTECHNOLOGY

SignalP 5.0 improves signal peptide predictions using deep neural networks

(2019) José Juan Almagro Armenteros et al.   NATURE BIOTECHNOLOGY

Genome Sequence Resource of a Puccinia striiformis Isolate infecting wheatgrass

(2019) Yuxiang Li et al.   PHYTOPATHOLOGY

A stripe rust effector Pst18363 targets and stabilizes TaNUDX23 that promotes stripe rust disease

(2019) Qian Yang et al.   NEW PHYTOLOGIST

Improved prediction of fungal effector proteins from secretomes with EffectorP 2.0

(2018) Jana Sperschneider et al.   MOLECULAR PLANT PATHOLOGY

Genome sequence resources for the wheat stripe rust pathogen (Puccinia striiformis f. sp. tritici) and the barley stripe rust pathogen (Puccinia striiformis f. sp. hordei)

(2018) Chongjing Xia et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

HMMER web server: 2018 update

(2018) Simon C Potter et al.   NUCLEIC ACIDS RESEARCH

Inheritance of Virulence, Construction of a Linkage Map, and Mapping Dominant Virulence Genes in Puccinia striiformis f. sp. tritici Through Characterization of a Sexual Population with Genotyping-by-Sequencing

(2018) Congying Yuan et al.   PHYTOPATHOLOGY

A Near-Complete Haplotype-Phased Genome of the Dikaryotic Wheat Stripe Rust Fungus Puccinia striiformis f. sp. tritici Reveals High Interhaplotype Diversity

(2018) Benjamin Schwessinger et al.   mBio

Effectors of plant-colonizing fungi and beyond

(2018) Simon Uhse et al.   PLoS Pathogens

Virulence and Molecular Characterization of Experimental Isolates of the Stripe Rust Pathogen (Puccinia striiformis) Indicate Somatic Recombination

(2017) Yu Lei et al.   PHYTOPATHOLOGY

Changes of Races and Virulence Genes in Puccinia striiformis f. sp. tritici, the Wheat Stripe Rust Pathogen, in the United States from 1968 to 2009

(2017) Tinglan Liu et al.   PLANT DISEASE

Variation in theAvrSr35gene determinesSr35resistance against wheat stem rust race Ug99

(2017) Andres Salcedo et al.   SCIENCE

Loss ofAvrSr50by somatic exchange in stem rust leads to virulence forSr50resistance in wheat

(2017) Jiapeng Chen et al.   SCIENCE

A Puccinia striiformis f. sp. tritici secreted protein activates plant immunity at the cell surface

(2017) Bayantes Dagvadorj et al.   Scientific Reports

Secretome Characterization and Correlation Analysis Reveal Putative Pathogenicity Mechanisms and Identify Candidate Avirulence Genes in the Wheat Stripe Rust Fungus Puccinia striiformis f. sp. tritici

(2017) Chongjing Xia et al.   Frontiers in Microbiology

Dissection of genomic features and variations of three pathotypes of Puccinia striiformis through whole genome sequencing

(2017) Kanti Kiran et al.   Scientific Reports

LOCALIZER: subcellular localization prediction of both plant and effector proteins in the plant cell

(2017) Jana Sperschneider et al.   Scientific Reports

Cladosporium fulvum Effectors: Weapons in the Arms Race with Tomato

(2016) Pierre J.G.M. de Wit   Annual Review of Phytopathology

Genome analysis and avirulence gene cloning using a high-density RADseq linkage map of the flax rust fungus, Melampsora lini

(2016) Claire Anderson et al.   BMC GENOMICS

The effector candidate repertoire of the arbuscular mycorrhizal fungus Rhizophagus clarus

(2016) Kinga Sędzielewska Toro et al.   BMC GENOMICS

Secreted protein gene derived-single nucleotide polymorphisms (SP-SNPs) reveal population diversity and differentiation of Puccinia striiformis f. sp. tritici in the United States

(2016) Chongjing Xia et al.   Fungal Biology

Rapid cloning of disease-resistance genes in plants using mutagenesis and sequence capture

(2016) Burkhard Steuernagel et al.   NATURE BIOTECHNOLOGY

Phased diploid genome assembly with single-molecule real-time sequencing

(2016) Chen-Shan Chin et al.   NATURE METHODS

Grass Hosts Harbor More Diverse Isolates of Puccinia striiformis Than Cereal Crops

(2016) P. Cheng et al.   PHYTOPATHOLOGY

Races of Puccinia striiformis f. sp. tritici in the United States in 2011 and 2012 and Comparison with Races in 2010

(2016) Anmin Wan et al.   PLANT DISEASE

Comparative Analysis Highlights Variable Genome Content of Wheat Rusts and Divergence of the Mating Loci

(2016) Christina A. Cuomo et al.   G3-Genes Genomes Genetics

Fungal Effectors and Plant Susceptibility

(2015) Libera Lo Presti et al.   Annual Review of Plant Biology

Genome-wide survey of artificial mutations induced by ethyl methanesulfonate and gamma rays in tomato

(2015) Kenta Shirasawa et al.   PLANT BIOTECHNOLOGY JOURNAL

Scanning the Effects of Ethyl Methanesulfonate on the Whole Genome of Lotus japonicus Using Second-Generation Sequencing Analysis

(2015) Nur Fatihah Mohd-Yusoff et al.   G3-Genes Genomes Genetics

Advances and Challenges in Computational Prediction of Effectors from Plant Pathogenic Fungi

(2015) Jana Sperschneider et al.   PLoS Pathogens

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Secretome analysis reveals effector candidates associated with broad host range necrotrophy in the fungal plant pathogen Sclerotinia sclerotiorum

(2014) Koanna Guyon et al.   BMC GENOMICS

Virulence and Molecular Analyses Support Asexual Reproduction of Puccinia striiformis f. sp. tritici in the U.S. Pacific Northwest

(2014) P. Cheng et al.   PHYTOPATHOLOGY

Efficient Genome-Wide Detection and Cataloging of EMS-Induced Mutations Using Exome Capture and Next-Generation Sequencing

(2014) I. M. Henry et al.   PLANT CELL

Virulence Characterization of Puccinia striiformis f. sp. tritici Using a New Set of Yr Single-Gene Line Differentials in the United States in 2010

(2014) Anmin Wan et al.   PLANT DISEASE

A comparative hidden Markov model analysis pipeline identifies proteins characteristic of cereal-infecting fungi

(2013) Jana Sperschneider et al.   BMC GENOMICS

Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis f. sp. tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors

(2013) Dario Cantu et al.   BMC GENOMICS

The million mutation project: A new approach to genetics in Caenorhabditis elegans

(2013) O. Thompson et al.   GENOME RESEARCH

A Bacterial Type III Secretion Assay for Delivery of Fungal Effector Proteins into Wheat

(2013) Narayana M. Upadhyaya et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Structures of the flax-rust effector AvrM reveal insights into the molecular basis of plant-cell entry and effector-triggered immunity

(2013) T. Ve et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High genome heterozygosity and endemic genetic recombination in the wheat stripe rust fungus

(2013) Wenming Zheng et al.   Nature Communications

Resequencing and Comparative Genomics of Stagonospora nodorum : Sectional Gene Absence and Effector Discovery

(2013) Robert Andrew Syme et al.   G3-Genes Genomes Genetics

GAPIT: genome association and prediction integrated tool

(2012) Alexander E. Lipka et al.   BIOINFORMATICS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Using Hierarchical Clustering of Secreted Protein Families to Classify and Rank Candidate Effectors of Rust Fungi

(2012) Diane G. O. Saunders et al.   PLoS One

FIMO: scanning for occurrences of a given motif

(2011) Charles E. Grant et al.   BIOINFORMATICS

Global status of stripe rust: a review of historical and current threats

(2011) Colin R. Wellings   EUPHYTICA

Identification of EMS-Induced Causal Mutations in a Non-Reference Arabidopsis thaliana Accession by Whole Genome Sequencing

(2011) N. Uchida et al.   PLANT AND CELL PHYSIOLOGY

Virulence Dynamics and Regional Structuring of Puccinia striiformis f. sp. tritici in France Between 1984 and 2009

(2011) Claude de Vallavieille-Pope et al.   PLANT DISEASE

Next Generation Sequencing Provides Rapid Access to the Genome of Puccinia striiformis f. sp. tritici, the Causal Agent of Wheat Stripe Rust

(2011) Dario Cantu et al.   PLoS One

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

(2011) S. Duplessis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Powdery mildew fungal effector candidates share N-terminal Y/F/WxC-motif

(2010) Dale Godfrey et al.   BMC GENOMICS

External Lipid PI3P Mediates Entry of Eukaryotic Pathogen Effectors into Plant and Animal Host Cells

(2010) Shiv D. Kale et al.   CELL

Whole-Genome Profiling of Mutagenesis in Caenorhabditis elegans

(2010) S. Flibotte et al.   GENETICS

Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire

(2010) C André Lévesque et al.   GENOME BIOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Association Genetics Reveals Three Novel Avirulence Genes from the Rice Blast Fungal Pathogen Magnaporthe oryzae

(2009) K. Yoshida et al.   PLANT CELL

High-Throughput Detection of Induced Mutations and Natural Variation Using KeyPoint™ Technology

(2009) Diana Rigola et al.   PLoS One

Leptosphaeria maculansavirulence geneAvrLm4-7confers a dual recognition specificity by theRlm4andRlm7resistance genes of oilseed rape, and circumventsRlm4-mediated recognition through a single amino acid change

(2008) Francis Parlange et al.   MOLECULAR MICROBIOLOGY