Genome-wide survey of artificial mutations induced by ethyl methanesulfonate and gamma rays in tomato

Patchwork sequencing of tomato San Marzano and Vesuviano varieties highlights genome-wide variations

(2014) Maria Ercolano et al.   BMC GENOMICS

The genome of the stress-tolerant wild tomato species Solanum pennellii

(2014) Anthony Bolger et al.   NATURE GENETICS

Genomic analyses provide insights into the history of tomato breeding

(2014) Tao Lin et al.   NATURE GENETICS

Exploring genetic variation in the tomato (SolanumsectionLycopersicon) clade by whole-genome sequencing

(2014) et al.   PLANT JOURNAL

Whole genome resequencing in tomato reveals variation associated with introgression and breeding events

(2013) Mathilde Causse et al.   BMC GENOMICS

DNA marker applications to molecular genetics and genomics in tomato

(2013) Kenta Shirasawa et al.   BREEDING SCIENCE

Genome-Wide Association Studies Using Single Nucleotide Polymorphism Markers Developed by Re-Sequencing of the Genomes of Cultivated Tomato

(2013) K. Shirasawa et al.   DNA RESEARCH

Genome-Wide SNP Genotyping to Infer the Effects on Gene Functions in Tomato

(2013) H. Hirakawa et al.   DNA RESEARCH

Genome-Wide Analysis of Intraspecific DNA Polymorphism in ‘Micro-Tom’, a Model Cultivar of Tomato (Solanum lycopersicum)

(2013) Masaaki Kobayashi et al.   PLANT AND CELL PHYSIOLOGY

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

Genome sequencing reveals agronomically important loci in rice using MutMap

(2012) Akira Abe et al.   NATURE BIOTECHNOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

The Mechanisms of UV Mutagenesis

(2011) Hironobu IKEHATA et al.   JOURNAL OF RADIATION RESEARCH

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Ensembl Genomes: an integrative resource for genome-scale data from non-vertebrate species

(2011) Paul J. Kersey et al.   NUCLEIC ACIDS RESEARCH

Identification of EMS-Induced Causal Mutations in a Non-Reference Arabidopsis thaliana Accession by Whole Genome Sequencing

(2011) N. Uchida et al.   PLANT AND CELL PHYSIOLOGY

Tomato TILLING Technology: Development of a Reverse Genetics Tool for the Efficient Isolation of Mutants from Micro-Tom Mutant Libraries

(2011) Yoshihiro Okabe et al.   PLANT AND CELL PHYSIOLOGY

TOMATOMA: A Novel Tomato Mutant Database Distributing Micro-Tom Mutant Collections

(2011) Takeshi Saito et al.   PLANT AND CELL PHYSIOLOGY

Shoot Branching and Leaf Dissection in Tomato Are Regulated by Homologous Gene Modules

(2011) B. L. Busch et al.   PLANT CELL

SNP Discovery and Linkage Map Construction in Cultivated Tomato

(2010) K. Shirasawa et al.   DNA RESEARCH

Molecular characterization of mutations induced by gamma irradiation in rice

(2010) Ryouhei Morita et al.   GENES & GENETIC SYSTEMS

An interspecific linkage map of SSR and intronic polymorphism markers in tomato

(2010) Kenta Shirasawa et al.   THEORETICAL AND APPLIED GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

CNV-seq, a new method to detect copy number variation using high-throughput sequencing

(2009) Chao Xie et al.   BMC BIOINFORMATICS

High-Throughput Detection of Induced Mutations and Natural Variation Using KeyPoint™ Technology

(2009) Diana Rigola et al.   PLoS One

Retention of Induced Mutations in a Drosophila Reverse-Genetic Resource

(2008) J. L. Cooper et al.   GENETICS

GGT 2.0: Versatile Software for Visualization and Analysis of Genetic Data

(2008) Ralph van Berloo   JOURNAL OF HEREDITY