Genome analyses of the wheat yellow (stripe) rust pathogen Puccinia striiformis f. sp. tritici reveal polymorphic and haustorial expressed secreted proteins as candidate effectors

The Genomics of Obligate (and Nonobligate) Biotrophs

(2012) Pietro D. Spanu   Annual Review of Phytopathology

Barley Stripe Mosaic Virus-Mediated Tools for Investigating Gene Function in Cereal Plants and Their Pathogens: Virus-Induced Gene Silencing, Host-Mediated Gene Silencing, and Virus-Mediated Overexpression of Heterologous Protein

(2012) W.-S. Lee et al.   PLANT PHYSIOLOGY

Using Hierarchical Clustering of Secreted Protein Families to Classify and Rank Candidate Effectors of Rust Fungi

(2012) Diane G. O. Saunders et al.   PLoS One

Genome Analyses of an Aggressive and Invasive Lineage of the Irish Potato Famine Pathogen

(2012) David E. L. Cooke et al.   PLoS Pathogens

Understanding and Exploiting Late Blight Resistance in the Age of Effectors

(2011) Vivianne G.A.A. Vleeshouwers et al.   Annual Review of Phytopathology

Diversity ofPuccinia striiformison Cereals and Grasses

(2011) Mogens S. Hovmøller et al.   Annual Review of Phytopathology

A Comprehensive Analysis of Genes Encoding Small Secreted Proteins Identifies Candidate Effectors inMelampsora larici-populina(Poplar Leaf Rust)

(2011) Stéphane Hacquard et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Next Generation Sequencing Provides Rapid Access to the Genome of Puccinia striiformis f. sp. tritici, the Causal Agent of Wheat Stripe Rust

(2011) Dario Cantu et al.   PLoS One

Obligate biotrophy features unraveled by the genomic analysis of rust fungi

(2011) S. Duplessis et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Proteome analysis of wheat leaf rust fungus, Puccinia triticina, infection structures enriched for haustoria

(2011) Xiao Song et al.   PROTEOMICS

Powdery mildew fungal effector candidates share N-terminal Y/F/WxC-motif

(2010) Dale Godfrey et al.   BMC GENOMICS

A map of human genome variation from population-scale sequencing

(2010) Richard M. Durbin et al.   NATURE

Escalating Threat of Wheat Rusts

(2010) M. S. Hovmoller et al.   SCIENCE

Genome sequence of the necrotrophic plant pathogen Pythium ultimum reveals original pathogenicity mechanisms and effector repertoire

(2010) C André Lévesque et al.   GENOME BIOLOGY

Differential expression analysis for sequence count data

(2010) Simon Anders et al.   GENOME BIOLOGY

T-REKS: identification of Tandem REpeats in sequences with a K-meanS based algorithm

(2009) Julien Jorda et al.   BIOINFORMATICS

Identification of expressed genes during compatible interaction between stripe rust (Puccinia striiformis) and wheat using a cDNA library

(2009) Jinbiao Ma et al.   BMC GENOMICS

Generation and analysis of expression sequence tags from haustoria of the wheat stripe rust fungus Puccinia striiformis f. sp. Tritici

(2009) Chuntao Yin et al.   BMC GENOMICS

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

TheMagnaporthe oryzaeAvirulence GeneAvrPiz-tEncodes a Predicted Secreted Protein That Triggers the Immunity in Rice Mediated by the Blast Resistance GenePiz-t

(2009) Wei Li et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Emerging Concepts in Effector Biology of Plant-Associated Organisms

(2009) Saskia A. Hogenhout et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans

(2009) Brian J. Haas et al.   NATURE

Effectors of biotrophic fungi and oomycetes: pathogenicity factors and triggers of host resistance

(2009) Peter N. Dodds et al.   NEW PHYTOLOGIST

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY

Stage-specific gene expression during urediniospore germination in Puccinia striiformis f. sp tritici

(2008) Yonghong Zhang et al.   BMC GENOMICS

Rapid global spread of two aggressive strains of a wheat rust fungus

(2008) MOGENS S. HOVMØLLER et al.   MOLECULAR ECOLOGY

Assessing the gene space in draft genomes

(2008) Genis Parra et al.   NUCLEIC ACIDS RESEARCH

Evidence for Increased Aggressiveness in a Recent Widespread Strain ofPuccinia striiformisf. sp.triticiCausing Stripe Rust of Wheat

(2008) Eugene A. Milus et al.   PHYTOPATHOLOGY