Genome relationships and LTR-retrotransposon diversity in three cultivated Capsicum L. (Solanaceae) species

Systematic survey of plant LTR-retrotransposons elucidates phylogenetic relationships of their polyprotein domains and provides a reference for element classification

(2019) Pavel Neumann et al.   Mobile DNA

Low coverage sequencing for repetitive DNA analysis in Passiflora edulis Sims: citogenomic characterization of transposable elements and satellite DNA

(2019) Vanessa Carvalho Cayres Pamponét et al.   BMC GENOMICS

DNA transposon invasion and microsatellite accumulation guide W chromosome differentiation in a Neotropical fish genome

(2019) Michelle Orane Schemberger et al.   CHROMOSOMA

Retrotransposons in Plant Genomes: Structure, Identification, and Classification through Bioinformatics and Machine Learning

(2019) Simon Orozco-Arias et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Analysis of retrotransposon abundance, diversity and distribution in holocentric Eleocharis (Cyperaceae) genomes

(2018) Thaíssa B de Souza et al.   ANNALS OF BOTANY

Heterochromatin distribution and histone modification patterns of H4K5 acetylation and H3S10 phosphorylation in Capsicum L.

(2018) Lívia do Vale Martins et al.   Crop Breeding and Applied Biotechnology

Production of embryo rescued hybrids between the landrace “Friariello” (Capsicum annuum var. annuum) and C. baccatum var. pendulum: phenotypic and cytological characterization

(2018) Gaetana Cremona et al.   EUPHYTICA

MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms

(2018) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetic diversity, population structure and genetic parameters of fruit traits in Capsicum chinense

(2018) Aline Fabiana Paladini Moreira et al.   SCIENTIA HORTICULTURAE

Heterochromatin distribution and histone modification patterns of H4K5 acetylation and H3S10 phosphorylation in Capsicum L.

(2018) Lívia do Vale Martins et al.   Crop Breeding and Applied Biotechnology

Structure and Distribution of Centromeric Retrotransposons at Diploid and Allotetraploid Coffea Centromeric and Pericentromeric Regions

(2018) Renata de Castro Nunes et al.   Frontiers in Plant Science

Discovery and annotation of a novel transposable element family in Gossypium

(2018) Hejun Lu et al.   BMC PLANT BIOLOGY

The Pfam protein families database in 2019

(2018) Sara El-Gebali et al.   NUCLEIC ACIDS RESEARCH

LTR-retrotransposons in plants: Engines of evolution

(2017) Leonardo Galindo-González et al.   GENE

Diversity, distribution and dynamics of full-length Copia and Gypsy LTR retroelements in Solanum lycopersicum

(2017) Rosalía Cristina Paz et al.   GENETICA

An Integrated Physical Map of the Cultivated Hot Chili Pepper, Capsicum baccatum var. Pendulum

(2017) Patricia M. Aguilera et al.   INTERNATIONAL JOURNAL OF AGRICULTURE AND BIOLOGY

Wild tobacco genomes reveal the evolution of nicotine biosynthesis

(2017) Shuqing Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogenetic relationships, diversification and expansion of chili peppers (Capsicum, Solanaceae)

(2016) Carolina Carrizo García et al.   ANNALS OF BOTANY

Comprehensive repeatome annotation reveals strong potential impact of repetitive elements on tomato ripening

(2016) Ophélie Jouffroy et al.   BMC GENOMICS

Sequence analyses and chromosomal distribution of the Tc1/Mariner element in Parodontidae fish (Teleostei: Characiformes)

(2016) Michelle Orane Schemberger et al.   GENE

FISH and AgNor mapping of the 45S and 5S rRNA genes in wild and cultivated species of Capsicum (Solananceae)

(2016) Marisel A. Scaldaferro et al.   GENOME

Heatmapper: web-enabled heat mapping for all

(2016) Sasha Babicki et al.   NUCLEIC ACIDS RESEARCH

Genome-wide repeat dynamics reflect phylogenetic distance in closely related allotetraploid Nicotiana (Solanaceae)

(2016) Steven Dodsworth et al.   PLANT SYSTEMATICS AND EVOLUTION

IBS: an illustrator for the presentation and visualization of biological sequences: Fig. 1.

(2015) Wenzhong Liu et al.   BIOINFORMATICS

Chromosomal distribution and evolution of abundant retrotransposons in plants: gypsy elements in diploid and polyploid Brachiaria forage grasses

(2015) Fabíola Carvalho Santos et al.   CHROMOSOME RESEARCH

The impact of the Tekay chromoviral elements on genome organisation and evolution ofAnemones.l. (Ranunculaceae)

(2015) J. Mlinarec et al.   PLANT BIOLOGY

A transposable element in a NAC gene is associated with drought tolerance in maize seedlings

(2015) Hude Mao et al.   Nature Communications

Transposable Elements Contribute to Activation of Maize Genes in Response to Abiotic Stress

(2015) Irina Makarevitch et al.   PLoS Genetics

Successful Wide Hybridization and Introgression Breeding in a Diverse Set of Common Peppers (Capsicum annuum) Using Different Cultivated Ají (C. baccatum) Accessions as Donor Parents

(2015) Juan Pablo Manzur et al.   PLoS One

The Contributions of Transposable Elements to the Structure, Function, and Evolution of Plant Genomes

(2014) Jeffrey L. Bennetzen et al.   Annual Review of Plant Biology

The genome of the stress-tolerant wild tomato species Solanum pennellii

(2014) Anthony Bolger et al.   NATURE GENETICS

Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species

(2014) Seungill Kim et al.   NATURE GENETICS

Boom-Bust Turnovers of Megabase-Sized Centromeric DNA in Solanum Species: Rapid Evolution of DNA Sequences Associated with Centromeres

(2014) H. Zhang et al.   PLANT CELL

Whole-genome sequencing of cultivated and wild peppers provides insights into Capsicum domestication and specialization

(2014) C. Qin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The impact of transposable elements in environmental adaptation

(2013) Elena Casacuberta et al.   MOLECULAR ECOLOGY

Euchromatic and heterochromatic compositional properties emerging from the analysis of Solanum lycopersicum BAC sequences

(2012) Miriam Di Filippo et al.   GENE

Heterochromatin type, amount and distribution in wild species of chili peppers (Capsicum, Solanaceae)

(2012) Marisel A. Scaldaferro et al.   GENETIC RESOURCES AND CROP EVOLUTION

FISH using a gag-like fragment probe reveals a common Ty3-gypsy-like retrotransposon in genome of Coffea species

(2012) Priscila Mary Yuyama et al.   GENOME

How important are transposons for plant evolution?

(2012) Damon Lisch   NATURE REVIEWS GENETICS

The sunflower (Helianthus annuusL.) genome reflects a recent history of biased accumulation of transposable elements

(2012) S. Evan Staton et al.   PLANT JOURNAL

Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data

(2011) T. Carver et al.   BIOINFORMATICS

Families of transposable elements, population structure and the origin of species

(2011) Jerzy Jurka et al.   Biology Direct

Comparative analysis of pepper and tomato reveals euchromatin expansion of pepper genome caused by differential accumulation of Ty3/Gypsy-like elements

(2011) Minkyu Park et al.   BMC GENOMICS

Evolution of the large genome in Capsicum annuum occurred through accumulation of single-type long terminal repeat retrotransposons and their derivatives

(2011) Minkyu Park et al.   PLANT JOURNAL

Organisation of the plant genome in chromosomes

(2011) J. S. Pat Heslop-Harrison et al.   PLANT JOURNAL

Plant centromeric retrotransposons: a structural and cytogenetic perspective

(2011) Pavel Neumann et al.   Mobile DNA

Occurrence and chromosome distribution of retroelements and NUPT sequences in Copaifera langsdorffii Desf. (Caesalpinioideae)

(2010) Marcos Letaif Gaeta et al.   CHROMOSOME RESEARCH

Genome sequencing and analysis of the model grass Brachypodium distachyon

(2010) John P. Vogel et al.   NATURE

Rapid DNA loss as a counterbalance to genome expansion through retrotransposon proliferation in plants

(2009) J. S. Hawkins et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE