DNA transposon invasion and microsatellite accumulation guide W chromosome differentiation in a Neotropical fish genome

The landscape of transposable elements and satellite DNAs in the genome of a dioecious plant spinach (Spinacia oleracea L.)

(2019) Shu-Fen Li et al.   Mobile DNA

Chromosome painting and comparative physical mapping of the sex chromosomes in Populus tomentosa and Populus deltoides

(2018) Haoyang Xin et al.   CHROMOSOMA

More sex chromosomes than autosomes in the Amazonian frog Leptodactylus pentadactylus

(2018) T. Gazoni et al.   CHROMOSOMA

Do multiple karyomorphs and population genetics of freshwater darter characines ( Apareiodon affinis ) indicate chromosomal speciation?

(2018) Viviane Demétrio do Nascimento et al.   ZOOLOGISCHER ANZEIGER

Miniscule differences between sex chromosomes in the giant genome of a salamander

(2018) Melissa C. Keinath et al.   Scientific Reports

BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics

(2017) Robert M Waterhouse et al.   MOLECULAR BIOLOGY AND EVOLUTION

Neo-sex Chromosomes in the Monarch Butterfly, Danaus plexippus

(2017) Andrew J. Mongue et al.   G3-Genes Genomes Genetics

Chromosomal Spreading of Microsatellites and (TTAGGG)n Sequences in the Characidium zebra and C. gomesi Genomes (Characiformes: Crenuchidae)

(2016) Marcela B. Pucci et al.   CYTOGENETIC AND GENOME RESEARCH

Sequence analyses and chromosomal distribution of the Tc1/Mariner element in Parodontidae fish (Teleostei: Characiformes)

(2016) Michelle Orane Schemberger et al.   GENE

Chromosome Analyses of Apareiodon argenteus and Apareiodon davisi (Characiformes, Parodontidae): An Extensive Chromosomal Polymorphism of 45S and 5S Ribosomal DNAs

(2016) Josiane Baccarin Traldi et al.   Zebrafish

Transposable elements and early evolution of sex chromosomes in fish

(2015) Domitille Chalopin et al.   CHROMOSOME RESEARCH

In situ Localization of (GATA)n and (TTAGGG)n Repeated DNAs and W Sex Chromosome Differentiation in Parodontidae (Actinopterygii: Characiformes)

(2015) Kaline Ziemniczak et al.   CYTOGENETIC AND GENOME RESEARCH

Purifying Selection Maintains Dosage-Sensitive Genes during Degeneration of the Threespine Stickleback Y Chromosome

(2015) Michael A. White et al.   MOLECULAR BIOLOGY AND EVOLUTION

Gonad transcriptome analysis of pearl oyster Pinctada margaritifera: identification of potential sex differentiation and sex determining genes

(2014) Vaihiti Teaniniuraitemoana et al.   BMC GENOMICS

A Comprehensive Transcriptome Provides Candidate Genes for Sex Determination/Differentiation and SSR/SNP Markers in Yellow Catfish

(2014) Xin Chen et al.   MARINE BIOTECHNOLOGY

Whole-genome sequence of a flatfish provides insights into ZW sex chromosome evolution and adaptation to a benthic lifestyle

(2014) Songlin Chen et al.   NATURE GENETICS

Microsatellite Organization in the Grasshopper Abracris flavolineata (Orthoptera: Acrididae) Revealed by FISH Mapping: Remarkable Spreading in the A and B Chromosomes

(2014) Diogo Milani et al.   PLoS One

Construction and Characterization of a Repetitive DNA Library in Parodontidae (Actinopterygii: Characiformes): A Genomic and Evolutionary Approach to the Degeneration of the W Sex Chromosome

(2014) Michelle Orane Schemberger et al.   Zebrafish

RepeatExplorer: a Galaxy-based web server for genome-wide characterization of eukaryotic repetitive elements from next-generation sequence reads

(2013) P. Novak et al.   BIOINFORMATICS

Y-chromosome evolution: emerging insights into processes of Y-chromosome degeneration

(2013) Doris Bachtrog   NATURE REVIEWS GENETICS

Transposable Elements Are Major Contributors to the Origin, Diversification, and Regulation of Vertebrate Long Noncoding RNAs

(2013) Aurélie Kapusta et al.   PLoS Genetics

Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species

(2013) Keith R Bradnam et al.   GigaScience

Losing identity: structural diversity of transposable elements belonging to different classes in the genome of Anopheles gambiae

(2012) Rita D Fernández-Medina et al.   BMC GENOMICS

Differentiation of repetitive DNA sites and sex chromosome systems reveal closely related group in Parodontidae (Actinopterygii: Characiformes)

(2012) Michelle Orane Schemberger et al.   GENETICA

A matter of life or death: How microsatellites emerge in and vanish from the human genome

(2011) Y. D. Kelkar et al.   GENOME RESEARCH

Repetitive DNA and next-generation sequencing: computational challenges and solutions

(2011) Todd J. Treangen et al.   NATURE REVIEWS GENETICS

Repetitive Elements May Comprise Over Two-Thirds of the Human Genome

(2011) A. P. Jason de Koning et al.   PLoS Genetics

Graph-based clustering and characterization of repetitive sequences in next-generation sequencing data

(2010) Petr Novák et al.   BMC BIOINFORMATICS

Satellite DNA and chromosomes in Neotropical fishes: methods, applications and perspectives

(2010) M. R. Vicari et al.   JOURNAL OF FISH BIOLOGY

A Helitron-Like Transposon Superfamily from Lepidoptera Disrupts (GAAA)n Microsatellites and is Responsible for Flanking Sequence Similarity within a Microsatellite Family

(2010) Brad S. Coates et al.   JOURNAL OF MOLECULAR EVOLUTION

Chromosomal markers in Parodontidae: an analysis of new and reviewed data with phylogenetic inferences

(2010) Elisangela Bellafronte et al.   REVIEWS IN FISH BIOLOGY AND FISHERIES

Transcriptional Rewiring of the Sex Determining dmrt1 Gene Duplicate by Transposable Elements

(2010) Amaury Herpin et al.   PLoS Genetics

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Transposable elements and the evolution of regulatory networks

(2008) Cédric Feschotte   NATURE REVIEWS GENETICS

The evolution of restricted recombination in sex chromosomes

(2008) Roberta Bergero et al.   TRENDS IN ECOLOGY & EVOLUTION