Structure and Distribution of Centromeric Retrotransposons at Diploid and Allotetraploid Coffea Centromeric and Pericentromeric Regions

Distribution of Divo in Coffea genomes, a poorly described family of angiosperm LTR-Retrotransposons

(2017) Mathilde Dupeyron et al.   MOLECULAR GENETICS AND GENOMICS

Genotyping-by-sequencing provides the first well-resolved phylogeny for coffee ( Coffea ) and insights into the evolution of caffeine content in its species

(2017) Perla Hamon et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Isolation and characterization of centromeric repetitive DNA sequences in Saccharum spontaneum

(2017) Wenpan Zhang et al.   Scientific Reports

DensityMap: a genome viewer for illustrating the densities of features

(2016) Sébastien Guizard et al.   BMC BIOINFORMATICS

Partial sequencing reveals the transposable element composition of Coffea genomes and provides evidence for distinct evolutionary stories

(2016) Romain Guyot et al.   MOLECULAR GENETICS AND GENOMICS

LTR retrotransposons, handy hitchhikers of plant regulation and stress response

(2015) Marie-Angèle Grandbastien   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Chromosomal distribution and evolution of abundant retrotransposons in plants: gypsy elements in diploid and polyploid Brachiaria forage grasses

(2015) Fabíola Carvalho Santos et al.   CHROMOSOME RESEARCH

Terminal-Repeat Retrotransposons with GAG Domain in Plant Genomes: A New Testimony on the Complex World of Transposable Elements

(2015) Cristian Chaparro et al.   Genome Biology and Evolution

Transposon Insertions, Structural Variations, and SNPs Contribute to the Evolution of the Melon Genome

(2015) Walter Sanseverino et al.   MOLECULAR BIOLOGY AND EVOLUTION

Holocentromeres inRhynchosporaare associated with genome-wide centromere-specific repeat arrays interspersed among euchromatin

(2015) André Marques et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Contributions of Transposable Elements to the Structure, Function, and Evolution of Plant Genomes

(2014) Jeffrey L. Bennetzen et al.   Annual Review of Plant Biology

Evolution of Centromeric Retrotransposons in Grasses

(2014) Anupma Sharma et al.   Genome Biology and Evolution

The coffee genome provides insight into the convergent evolution of caffeine biosynthesis

(2014) F. Denoeud et al.   SCIENCE

Transcriptional Activity, Chromosomal Distribution and Expression Effects of Transposable Elements in Coffea Genomes

(2013) Fabrício R. Lopes et al.   PLoS One

Wheat centromeric retrotransposons: the new ones take a major role in centromeric structure

(2012) Baochun Li et al.   PLANT JOURNAL

A Highly Conserved, Small LTR Retrotransposon that Preferentially Targets Genes in Grass Genomes

(2012) Dongying Gao et al.   PLoS One

Genome Size and Transposable Element Content as Determined by High-Throughput Sequencing in Maize and Zea luxurians

(2011) Maud I. Tenaillon et al.   Genome Biology and Evolution

Micro-collinearity and genome evolution in the vicinity of an ethylene receptor gene of cultivated diploid and allotetraploid coffee species (Coffea)

(2011) Qingyi Yu et al.   PLANT JOURNAL

Organisation of the plant genome in chromosomes

(2011) J. S. Pat Heslop-Harrison et al.   PLANT JOURNAL

Loss of centromeric histone H3 (CENH3) from centromeres precedes uniparental chromosome elimination in interspecific barley hybrids

(2011) M. Sanei et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Plant centromeric retrotransposons: a structural and cytogenetic perspective

(2011) Pavel Neumann et al.   Mobile DNA

The Gypsy Database (GyDB) of mobile genetic elements: release 2.0

(2010) C. Llorens et al.   NUCLEIC ACIDS RESEARCH

Evolutionary conservation, diversity and specificity of LTR-retrotransposons in flowering plants: insights from genome-wide analysis and multi-specific comparison

(2010) Jianchang Du et al.   PLANT JOURNAL

Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees

(2009) Carlos Llorens et al.   Biology Direct

Divergence in centromere structure distinguishes related genomes in Coix lacryma-jobi and its wild relative

(2009) Yonghua Han et al.   CHROMOSOMA

Impact of transposable elements on the organization and function of allopolyploid genomes

(2009) Christian Parisod et al.   NEW PHYTOLOGIST

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

Structure and dynamics of retrotransposons at wheat centromeres and pericentromeres

(2008) Zhao Liu et al.   CHROMOSOMA

Chromodomains direct integration of retrotransposons to heterochromatin

(2008) X. Gao et al.   GENOME RESEARCH