Chromosomal distribution and evolution of abundant retrotransposons in plants: gypsy elements in diploid and polyploid Brachiaria forage grasses

Diversity and relationships ofCrocus sativusand its relatives analysed by inter-retroelement amplified polymorphism (IRAP)

(2015) Nouf Fakieh Alsayied et al.   ANNALS OF BOTANY

Origin and domestication of papaya Yhchromosome

(2015) Robert VanBuren et al.   GENOME RESEARCH

Transposons play an important role in the evolution and diversification of centromeres among closely related species

(2015) Dongying Gao et al.   Frontiers in Plant Science

Genome expansion of Arabis alpina linked with retrotransposition and reduced symmetric DNA methylation

(2015) Eva-Maria Willing et al.   Nature Plants

Doubling down on genomes: Polyploidy and crop plants

(2014) Simon Renny-Byfield et al.   AMERICAN JOURNAL OF BOTANY

The Contributions of Transposable Elements to the Structure, Function, and Evolution of Plant Genomes

(2014) Jeffrey L. Bennetzen et al.   Annual Review of Plant Biology

The diversification and activity of hAT transposons in Musa genomes

(2014) Gerhard Menzel et al.   CHROMOSOME RESEARCH

Profiling of extensively diversified plant LINEs reveals distinct plant-specific subclades

(2014) Tony Heitkam et al.   PLANT JOURNAL

Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies

(2014) David B Neale et al.   GENOME BIOLOGY

The repetitive component of the A genome of peanut (Arachis hypogaea) and its role in remodelling intergenic sequence space since its evolutionary divergence from the B genome

(2013) David J. Bertioli et al.   ANNALS OF BOTANY

The impact of transposable elements in environmental adaptation

(2013) Elena Casacuberta et al.   MOLECULAR ECOLOGY

The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution

(2013) Ignazio Verde et al.   NATURE GENETICS

Genome evolution: extinction, continuation or explosion?

(2012) JS (Pat) Heslop-Harrison   CURRENT OPINION IN PLANT BIOLOGY

The banana (Musa acuminata) genome and the evolution of monocotyledonous plants

(2012) Angélique D’Hont et al.   NATURE

Bioinformatics and genomic analysis of transposable elements in eukaryotic genomes

(2011) Mateusz Janicki et al.   CHROMOSOME RESEARCH

Transposable element origins of epigenetic gene regulation

(2011) Damon Lisch et al.   CURRENT OPINION IN PLANT BIOLOGY

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

De novogenetic variation associated with retrotransposon activation, genomic rearrangements and trait variation in a recombinant inbred line population ofBrassica napusderived from interspecific hybridization withBrassica rapa

(2011) Jun Zou et al.   PLANT JOURNAL

The largest eukaryotic genome of them all?

(2010) JAUME PELLICER et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Morphological diversity of chromosomes bearing ribosomal DNA loci in Brachiaria species

(2010) Yukio Akiyama et al.   GRASSLAND SCIENCE

Genome sequencing and analysis of the model grass Brachypodium distachyon

(2010) John P. Vogel et al.   NATURE

The Gypsy Database (GyDB) of mobile genetic elements: release 2.0

(2010) C. Llorens et al.   NUCLEIC ACIDS RESEARCH

Network dynamics of eukaryotic LTR retroelements beyond phylogenetic trees

(2009) Carlos Llorens et al.   Biology Direct

Nested Ty3-gypsy retrotransposons of a single Beta procumbens centromere contain a putative chromodomain

(2009) Beatrice Weber et al.   CHROMOSOME RESEARCH

Origin of a polyploid accession of Brachiaria humidicola (Poaceae: Panicoideae: Paniceae)

(2009) K.R. Boldrini et al.   GENETICS AND MOLECULAR RESEARCH

Identifying repeats and transposable elements in sequenced genomes: how to find your way through the dense forest of programs

(2009) E Lerat   HEREDITY

Impact of transposable elements on the organization and function of allopolyploid genomes

(2009) Christian Parisod et al.   NEW PHYTOLOGIST

Physical mapping of rDNA genes corroborates allopolyploid origin in apomictic Brachiaria brizantha

(2009) Stephan Nielen et al.   SEXUAL PLANT REPRODUCTION

Allopolyploidization-accommodated Genomic Sequence Changes in Triticale

(2008) X.-F. Ma et al.   ANNALS OF BOTANY

Chromodomains direct integration of retrotransposons to heterochromatin

(2008) X. Gao et al.   GENOME RESEARCH