Diversity, distribution and dynamics of full-length Copia and Gypsy LTR retroelements in Solanum lycopersicum

GrTEdb: the first web-based database of transposable elements in cotton (Gossypium raimondii)

(2017) Zhenzhen Xu et al.   Database-The Journal of Biological Databases and Curation

Genome-wide analysis of LTR-retrotransposons in oil palm

(2015) Thierry Beulé et al.   BMC GENOMICS

Transcriptionally active LTR retrotransposons in Eucalyptus genus are differentially expressed and insertionally polymorphic

(2015) Helena Sanches Marcon et al.   BMC PLANT BIOLOGY

HISAT: a fast spliced aligner with low memory requirements

(2015) Daehwan Kim et al.   NATURE METHODS

Short-term hybridisation activates Tnt1 and Tto1 Copia retrotransposons in wild tuber-bearingSolanumspecies

(2015) R. C. Paz et al.   PLANT BIOLOGY

Genome-wide Annotation and Comparative Analysis of Long Terminal Repeat Retrotransposons between Pear Species of P. bretschneideri and P. Communis

(2015) Hao Yin et al.   Scientific Reports

Young but not relatively old retrotransposons are preferentially located in gene-rich euchromatic regions in tomato (Solanum lycopersicum) plants

(2014) Yingxiu Xu et al.   PLANT JOURNAL

Annotation and sequence diversity of transposable elements in common bean (Phaseolus vulgaris)

(2014) Dongying Gao et al.   Frontiers in Plant Science

Young, intact and nested retrotransposons are abundant in the onion and asparagus genomes

(2013) C. Vitte et al.   ANNALS OF BOTANY

Comparative Genomic Paleontology across Plant Kingdom Reveals the Dynamics of TE-Driven Genome Evolution

(2013) Moaine El Baidouri et al.   Genome Biology and Evolution

TARE1, a Mutated Copia-Like LTR Retrotransposon Followed by Recent Massive Amplification in Tomato

(2013) Hao Yin et al.   PLoS One

Active Transposition in Genomes

(2012) Cheng Ran Lisa Huang et al.   Annual Review of Genetics

Analysis of plant LTR-retrotransposons at the fine-scale family level reveals individual molecular patterns

(2012) Douglas S Domingues et al.   BMC GENOMICS

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

Evolutionary reshuffling in the Errantivirus lineage Elbe within theBeta vulgarisgenome

(2012) Cora Wollrab et al.   PLANT JOURNAL

The struggle for life of the genome's selfish architects

(2011) Aurélie Hua-Van et al.   Biology Direct

Comparative analysis of pepper and tomato reveals euchromatin expansion of pepper genome caused by differential accumulation of Ty3/Gypsy-like elements

(2011) Minkyu Park et al.   BMC GENOMICS

Transcriptional activity of transposable elements in maize

(2010) Carlos M Vicient   BMC GENOMICS

The Gypsy Database (GyDB) of mobile genetic elements: release 2.0

(2010) C. Llorens et al.   NUCLEIC ACIDS RESEARCH

Evolutionary conservation, diversity and specificity of LTR-retrotransposons in flowering plants: insights from genome-wide analysis and multi-specific comparison

(2010) Jianchang Du et al.   PLANT JOURNAL

A New Family of Ty1-copia-Like Retrotransposons Originated in the Tomato Genome by a Recent Horizontal Transfer Event

(2009) X. Cheng et al.   GENETICS

Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons?

(2009) Z. Tian et al.   GENOME RESEARCH

Transposable Elements and Factors Influencing their Success in Eukaryotes

(2009) E. J. Pritham   JOURNAL OF HEREDITY

SeaView Version 4: A Multiplatform Graphical User Interface for Sequence Alignment and Phylogenetic Tree Building

(2009) M. Gouy et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Sorghum bicolor genome and the diversification of grasses

(2009) Andrew H. Paterson et al.   NATURE

Identification of an active LTR retrotransposon in rice

(2009) Nathalie Picault et al.   PLANT JOURNAL

Genome organization of the tomatosunlocus and characterization of the unusual retrotransposonRider

(2009) Ning Jiang et al.   PLANT JOURNAL

The B73 Maize Genome: Complexity, Diversity, and Dynamics

(2009) P. S. Schnable et al.   SCIENCE

The Tnt1 family member Retrosol copy number and structure disclose retrotransposon diversification in different Solanum species

(2008) M. E. Manetti et al.   MOLECULAR GENETICS AND GENOMICS

Invasion of the Arabidopsis Genome by the Tobacco Retrotransposon Tnt1 Is Controlled by Reversible Transcriptional Gene Silencing

(2008) J. Perez-Hormaeche et al.   PLANT PHYSIOLOGY