Nuclear Gene Transformation in the Dinoflagellate Oxyrrhis marina

Genetic transformation of the dinoflagellate chloroplast

(2019) Isabel C Nimmo et al.   eLife

Two divergent Symbiodinium genomes reveal conservation of a gene cluster for sunscreen biosynthesis and recently lost genes

(2018) Eiichi Shoguchi et al.   BMC GENOMICS

Transformation of Diplonema papillatum , the type species of the highly diverse and abundant marine microeukaryotes Diplonemida (Euglenozoa)

(2018) Binnypreet Kaur et al.   ENVIRONMENTAL MICROBIOLOGY

Viral proteins as a potential driver of histone depletion in dinoflagellates

(2018) Nicholas A. T. Irwin et al.   Nature Communications

Genetic Engineering of Crypthecodinium cohnii to Increase Growth and Lipid Accumulation

(2018) Jinjin Diao et al.   Frontiers in Microbiology

Transfection of choanoflagellates illuminates their cell biology and the ancestry of animal septins

(2018) David S. Booth et al.   MOLECULAR BIOLOGY OF THE CELL

Molecular insights into a dinoflagellate bloom

(2016) Weida Gong et al.   ISME Journal

Major transitions in dinoflagellate evolution unveiled by phylotranscriptomics

(2016) Jan Janouškovec et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle

(2016) M. Aranda et al.   Scientific Reports

Single-cell transcriptomics using spliced leader PCR: Evidence for multiple losses of photosynthesis in polykrikoid dinoflagellates

(2015) Gregory S. Gavelis et al.   BMC GENOMICS

Transient transformation of cultured photosynthetic dinoflagellates (Symbiodinium spp.) with plant-targeted vectors

(2015) Mario Fernando Ortiz-Matamoros   CIENCIAS MARINAS

Metatranscriptome profiling reveals versatile N-nutrient utilization, CO2 limitation, oxidative stress, and active toxin production in an Alexandrium fundyense bloom

(2015) Yunyun Zhuang et al.   HARMFUL ALGAE

Integration of plastids with their hosts: Lessons learned from dinoflagellates

(2015) Richard G. Dorrell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Symbiodinium kawagutii genome illuminates dinoflagellate gene expression and coral symbiosis

(2015) S. Lin et al.   SCIENCE

Heterologous DNA Uptake in Cultured Symbiodinium spp. Aided by Agrobacterium tumefaciens

(2015) Mario Fernando Ortiz-Matamoros et al.   PLoS One

Analysis of EST data of the marine protist Oxyrrhis marina, an emerging model for alveolate biology and evolution

(2014) Renny Lee et al.   BMC GENOMICS

Metatranscriptome profiling of a harmful algal bloom

(2014) Endymion D. Cooper et al.   HARMFUL ALGAE

Light-Promoted Rhodopsin Expression and Starvation Survival in the Marine Dinoflagellate Oxyrrhis marina

(2014) Zhiling Guo et al.   PLoS One

Draft Assembly of the Symbiodinium minutum Nuclear Genome Reveals Dinoflagellate Gene Structure

(2013) Eiichi Shoguchi et al.   CURRENT BIOLOGY

An improved method for achieving high-quality RNA for copepod transcriptomic studies

(2013) Huan Zhang et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

“Eco-omics”: A Review of the Application of Genomics, Transcriptomics, and Proteomics for the Study of the Ecology of Harmful Algae

(2013) T. I. McLean   MICROBIAL ECOLOGY

Dinoflagellate phylogeny revisited: Using ribosomal proteins to resolve deep branching dinoflagellate clades

(2013) Tsvetan R. Bachvaroff et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Proof that Dinoflagellate Spliced Leader (DinoSL) is a Useful Hook for Fishing Dinoflagellate Transcripts from Mixed Microbial Samples: Symbiodinium kawagutii as a Case Study

(2013) Huan Zhang et al.   PROTIST

Loss of Nucleosomal DNA Condensation Coincides with Appearance of a Novel Nuclear Protein in Dinoflagellates

(2012) Sebastian G. Gornik et al.   CURRENT BIOLOGY

Symbiodinium Transcriptomes: Genome Insights into the Dinoflagellate Symbionts of Reef-Building Corals

(2012) Till Bayer et al.   PLoS One

The transcriptome of the novel dinoflagellate Oxyrrhis marina (Alveolata: Dinophyceae): response to salinity examined by 454 sequencing

(2011) Chris D Lowe et al.   BMC GENOMICS

The Mitochondrial Genome and Transcriptome of the Basal Dinoflagellate Hematodinium sp.: Character Evolution within the Highly Derived Mitochondrial Genomes of Dinoflagellates

(2011) C. J. Jackson et al.   Genome Biology and Evolution

Recent progress in Symbiodinium transcriptomics

(2011) William Leggat et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Transcriptome remodeling associated with chronological aging in the dinoflagellate, Karenia brevis

(2011) Jillian G. Johnson et al.   Marine Genomics

Comparative Genomic and Transcriptomic Characterization of the Toxigenic Marine Dinoflagellate Alexandrium ostenfeldii

(2011) Nina Jaeckisch et al.   PLoS One

Genomic understanding of dinoflagellates

(2011) Senjie Lin   RESEARCH IN MICROBIOLOGY

A bacterial proteorhodopsin proton pump in marine eukaryotes

(2011) Claudio H. Slamovits et al.   Nature Communications

Gene Expression in Proliferating Cells of the Dinoflagellate Alexandrium catenella (Dinophyceae)

(2010) E. Toulza et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Birefringence and DNA Condensation of Liquid Crystalline Chromosomes

(2010) Man H. Chow et al.   EUKARYOTIC CELL

The role of Oxyrrhis marina as a model prey: current work and future directions

(2010) Z. Yang et al.   JOURNAL OF PLANKTON RESEARCH

Contributions of Oxyrrhis marina to molecular biology, genomics and organelle evolution of dinoflagellates

(2010) Claudio H. Slamovits et al.   JOURNAL OF PLANKTON RESEARCH

An introduction to the special issue: Oxyrrhis marina, a model organism?

(2010) D. J. S. Montagnes et al.   JOURNAL OF PLANKTON RESEARCH

Feeding in the dinoflagellate Oxyrrhis marina: linking behaviour with mechanisms

(2010) E. C. Roberts et al.   JOURNAL OF PLANKTON RESEARCH

Oxyrrhis marina growth, sex and reproduction

(2010) D. J. S. Montagnes et al.   JOURNAL OF PLANKTON RESEARCH

Transcriptome Profiling of a Toxic Dinoflagellate Reveals a Gene-Rich Protist and a Potential Impact on Gene Expression Due to Bacterial Presence

(2010) Ahmed Moustafa et al.   PLoS One

Spliced leader-based metatranscriptomic analyses lead to recognition of hidden genomic features in dinoflagellates

(2010) S. Lin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Dinoflagellate Spliced Leader RNA Genes Display a Variety of Sequences and Genomic Arrangements

(2009) H. Zhang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Distinct Gene Number-Genome Size Relationships for Eukaryotes and Non-Eukaryotes: Gene Content Estimation for Dinoflagellate Genomes

(2009) Yubo Hou et al.   PLoS One

Localization and Copy Number of the Protein-Coding Genes Actin, α-Tubulin, and HSP90 in the Nucleus of a Primitive Dinoflagellate,Oxyrrhis marina

(2009) Junji Sano et al.   ZOOLOGICAL SCIENCE

mRNA EDITING AND SPLICED-LEADER RNATRANS-SPLICING GROUPSOXYRRHIS,NOCTILUCA,HETEROCAPSA, ANDAMPHIDINIUMAS BASAL LINEAGES OF DINOFLAGELLATES

(2008) Huan Zhang et al.   JOURNAL OF PHYCOLOGY

Mechanism(s) of long chain n-3 essential fatty acid production in two species of heterotrophic protists: Oxyrrhis marina and Gyrodinium dominans

(2008) Eric D. Lund et al.   MARINE BIOLOGY

Plastid-Derived Genes in the Nonphotosynthetic Alveolate Oxyrrhis marina

(2008) C. H. Slamovits et al.   MOLECULAR BIOLOGY AND EVOLUTION

Rifamycin antibiotic resistance by ADP-ribosylation: Structure and diversity of Arr

(2008) J. Baysarowich et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA