Initial Characterization of the Chloroplast Genome of Vicia sepium, an Important Wild Resource Plant, and Related Inferences About Its Evolution

Detecting useful genetic markers and reconstructing the phylogeny of an important medicinal resource plant, Artemisia selengensis, based on chloroplast genomics

(2019) Dong Meng et al.   PLoS One

Comparative Analysis of the Chloroplast Genomes of the Chinese Endemic Genus Urophysa and Their Contribution to Chloroplast Phylogeny and Adaptive Evolution

(2018) Deng-Feng Xie et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Different Natural Selection Pressures on the atpF Gene in Evergreen Sclerophyllous and Deciduous Oak Species: Evidence from Comparative Analysis of the Complete Chloroplast Genome of Quercus aquifolioides with Other Oak Species

(2018) Kangquan Yin et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Diversity and evolution of rice progenitors in Australia

(2018) Ali M. Moner et al.   Ecology and Evolution

Development of high transferability cpSSR markers for individual identification and genetic investigation in Cupressaceae species

(2018) Li-Sha Huang et al.   Ecology and Evolution

Comparative Chloroplast Genomics of Gossypium Species: Insights Into Repeat Sequence Variations and Phylogeny

(2018) Ying Wu et al.   Frontiers in Plant Science

Comparative Chloroplast Genomics of Dipsacales Species: Insights Into Sequence Variation, Adaptive Evolution, and Phylogenetic Relationships

(2018) Wei-Bing Fan et al.   Frontiers in Plant Science

Plastid Genome Evolution in the Early-Diverging Legume Subfamily Cercidoideae (Fabaceae)

(2018) Yin-Huan Wang et al.   Frontiers in Plant Science

The complete chloroplast genome of an inverted-repeat-lacking species, Vicia sepium, and its phylogeny

(2018) Chaoyang Li et al.   Mitochondrial DNA Part B-Resources

Comparative chloroplast genomes of Paris Sect. Marmorata: insights into repeat regions and evolutionary implications

(2018) Xiaoyang Gao et al.   BMC GENOMICS

The complete chloroplast genome sequence of Dodonaea viscosa: comparative and phylogenetic analyses

(2017) Josphat K. Saina et al.   GENETICA

Potential value of the common vetch (Vicia sativa L.) as an animal feedstuff: a review

(2017) Y. F. Huang et al.   JOURNAL OF ANIMAL PHYSIOLOGY AND ANIMAL NUTRITION

DAMBE6: New Tools for Microbial Genomics, Phylogenetics, and Molecular Evolution

(2017) Xuhua Xia   JOURNAL OF HEREDITY

Characterization of the whole chloroplast genome of Chikusichloa mutica and its comparison with other rice tribe (Oryzeae) species

(2017) Zhiqiang Wu et al.   PLoS One

The Complete Chloroplast Genome of Wild Rice (Oryza minuta) and Its Comparison to Related Species

(2017) Sajjad Asaf et al.   Frontiers in Plant Science

The Chloroplast Genome of Passiflora edulis (Passifloraceae) Assembled from Long Sequence Reads: Structural Organization and Phylogenomic Studies in Malpighiales

(2017) Luiz A. Cauz-Santos et al.   Frontiers in Plant Science

Characterization of the complete chloroplast genome sequence of Camellia oleifera in Hainan, China

(2017) Wan Zhang et al.   Mitochondrial DNA Part B-Resources

Inferring the evolutionary mechanism of the chloroplast genome size by comparing whole-chloroplast genome sequences in seed plants

(2017) Zheng Xiao-Ming et al.   Scientific Reports

Development of chloroplast genome resources for peanut (Arachis hypogaea L.) and other species of Arachis

(2017) Dongmei Yin et al.   Scientific Reports

Complete Chloroplast Genome Sequence of Decaisnea insignis: Genome Organization, Genomic Resources and Comparative Analysis

(2017) Bin Li et al.   Scientific Reports

Chloroplast genomes of Arabidopsis halleri ssp. gemmifera and Arabidopsis lyrata ssp. petraea: Structures and comparative analysis

(2017) Sajjad Asaf et al.   Scientific Reports

The complete chloroplast genome ofGracilariopsis lemaneiformis(Rhodophyta) gives new insight into the evolution of family Gracilariaceae

(2016) Qingwei Du et al.   JOURNAL OF PHYCOLOGY

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

(2016) Sudhir Kumar et al.   MOLECULAR BIOLOGY AND EVOLUTION

Intraspecific and heteroplasmic variations, gene losses and inversions in the chloroplast genome of Astragalus membranaceus

(2016) Wanjun Lei et al.   Scientific Reports

Phylogenetic relationships among sections Vicia, Sepium and Lathyroides of Vicia subgenus Vicia: isozyme evidence

(2015) Vello Jaaska   BIOCHEMICAL SYSTEMATICS AND ECOLOGY

Plann: A Command-Line Application for Annotating Plastome Sequences

(2015) Daisie I. Huang et al.   Applications in Plant Sciences

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Protein and amino acid composition of select wild legume species of tribe Fabeae

(2014) Elena Pastor-Cavada et al.   FOOD CHEMISTRY

Evolutionary and biotechnology implications of plastid genome variation in the inverted-repeat-lacking clade of legumes

(2014) Jamal Sabir et al.   PLANT BIOTECHNOLOGY JOURNAL

Horizontal Transfer of DNA from the Mitochondrial to the Plastid Genome and Its Subsequent Evolution in Milkweeds (Apocynaceae)

(2013) Shannon C.K. Straub et al.   Genome Biology and Evolution

The Complete Chloroplast Genome Sequence of Cephalotaxus oliveri (Cephalotaxaceae): Evolutionary Comparison of Cephalotaxus Chloroplast DNAs and Insights into the Loss of Inverted Repeat Copies in Gymnosperms

(2013) Xuan Yi et al.   Genome Biology and Evolution

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

OrganellarGenomeDRAW—a suite of tools for generating physical maps of plastid and mitochondrial genomes and visualizing expression data sets

(2013) Marc Lohse et al.   NUCLEIC ACIDS RESEARCH

Systematics, biogeography, and character evolution of the legume tribe Fabeae with special focus on the middle-Atlantic island lineages

(2012) Hanno Schaefer et al.   BMC EVOLUTIONARY BIOLOGY

CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences

(2012) Chang Liu et al.   BMC GENOMICS

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

(2012) Ruibang Luo et al.   GigaScience

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

(2011) Nabil-Fareed Alikhan et al.   BMC GENOMICS

Exploiting Expressed Sequence Tag Databases for the Development and Characterization of Gene-Derived Simple Sequence Repeat Markers in the Opium Poppy (Papaver somniferum L.) for Forensic Applications

(2011) Eun Jung Lee et al.   JOURNAL OF FORENSIC SCIENCES

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

(2011) Susann Wicke et al.   PLANT MOLECULAR BIOLOGY

Scaffolding pre-assembled contigs using SSPACE

(2010) Marten Boetzer et al.   BIOINFORMATICS

Localized hypermutation and associated gene losses in legume chloroplast genomes

(2010) A. M. Magee et al.   GENOME RESEARCH

Jalview Version 2--a multiple sequence alignment editor and analysis workbench

(2009) A. M. Waterhouse et al.   BIOINFORMATICS

Complete plastid genome sequence of the chickpea (Cicer arietinum) and the phylogenetic distribution of rps12 and clpP intron losses among legumes (Leguminosae)

(2008) Robert K. Jansen et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Whole-Gene Positive Selection, Elevated Synonymous Substitution Rates, Duplication, and Indel Evolution of the Chloroplast clpP1 Gene

(2008) Per Erixon et al.   PLoS One