The complete chloroplast genome ofGracilariopsis lemaneiformis(Rhodophyta) gives new insight into the evolution of family Gracilariaceae

Phylogeny of Gracilariaceae (Rhodophyta): evidence from plastid and mitochondrial nucleotide sequences

(2015) Goia de M. Lyra et al.   JOURNAL OF PHYCOLOGY

Unique repeat and plasmid sequences in the mitochondrial genome ofGracilaria chilensis(Gracilariales, Rhodophyta)

(2015) Jun-Mo Lee et al.   PHYCOLOGIA

Extreme Features of the Galdieria sulphuraria Organellar Genomes: A Consequence of Polyextremophily?

(2015) Kanika Jain et al.   Genome Biology and Evolution

Temperature response of photosynthetic light- and carbon-use characteristics in the red seaweedGracilariopsis lemaneiformis(Gracilariales, Rhodophyta)

(2014) Dinghui Zou et al.   JOURNAL OF PHYCOLOGY

Highly conserved organellar genomes in the Gracilariales as inferred using new data from the Hawaiian invasive algaGracilaria salicornia(Rhodophyta)

(2014) Matthew A. Campbell et al.   PHYCOLOGIA

Echinochloa Chloroplast Genomes: Insights into the Evolution and Taxonomic Identification of Two Weedy Species

(2014) Chu-Yu Ye et al.   PLoS One

BEAST 2: A Software Platform for Bayesian Evolutionary Analysis

(2014) Remco Bouckaert et al.   PLoS Computational Biology

Horizontal gene transfer in plants

(2013) Caihua Gao et al.   FUNCTIONAL & INTEGRATIVE GENOMICS

Molecular cloning and expression analysis of glutathione peroxidase and glutathione reductase from Gracilaria lemaneiformis under heat stress

(2013) Ning Lu et al.   JOURNAL OF APPLIED PHYCOLOGY

The chloroplast genome of the diatom Seminavis robusta: New features introduced through multiple mechanisms of horizontal gene transfer

(2013) Tore Brembu et al.   Marine Genomics

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Reconstructing mitochondrial genomes directly from genomic next-generation sequencing reads—a baiting and iterative mapping approach

(2013) Christoph Hahn et al.   NUCLEIC ACIDS RESEARCH

Evolution of Red Algal Plastid Genomes: Ancient Architectures, Introns, Horizontal Gene Transfer, and Taxonomic Utility of Plastid Markers

(2013) Jan Janouškovec et al.   PLoS One

Complete Sequence and Analysis of Plastid Genomes of Two Economically Important Red Algae: Pyropia haitanensis and Pyropia yezoensis

(2013) Li Wang et al.   PLoS One

Genome Survey Sequencing and Genetic Background Characterization of Gracilariopsis lemaneiformis (Rhodophyta) Based on Next-Generation Sequencing

(2013) Wei Zhou et al.   PLoS One

The Plastid Genome of the Red Macroalga Grateloupia taiwanensis (Halymeniaceae)

(2013) Michael S. DePriest et al.   PLoS One

Complete Chloroplast Genome of Sedum sarmentosum and Chloroplast Genome Evolution in Saxifragales

(2013) Wenpan Dong et al.   PLoS One

Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida

(2013) J. Collen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Unipro UGENE: a unified bioinformatics toolkit

(2012) Konstantin Okonechnikov et al.   BIOINFORMATICS

CpGAVAS, an integrated web server for the annotation, visualization, analysis, and GenBank submission of completely sequenced chloroplast genome sequences

(2012) Chang Liu et al.   BMC GENOMICS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Analysis of Complete Nucleotide Sequences of 12 Gossypium Chloroplast Genomes: Origin and Evolution of Allotetraploids

(2012) Qin Xu et al.   PLoS One

High-throughput pyrosequencing of the chloroplast genome of a highly neutral-lipid-producing marine pennate diatom, Fistulifera sp. strain JPCC DA0580

(2011) Tsuyoshi Tanaka et al.   PHOTOSYNTHESIS RESEARCH

Bcheck: a wrapper tool for detecting RNase P RNA genes

(2010) Dilmurat Yusuf et al.   BMC GENOMICS

The Complete Plastid Genomes of the Two ‘Dinotoms’ Durinskia baltica and Kryptoperidinium foliaceum

(2010) Behzad Imanian et al.   PLoS One

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS

Circos: An information aesthetic for comparative genomics

(2009) M. Krzywinski et al.   GENOME RESEARCH

Advances in chloroplast engineering

(2009) Huan-Huan Wang et al.   Journal of Genetics and Genomics

Triassic origin and early radiation of multicellular volvocine algae

(2009) M. D. Herron et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Whole-Gene Positive Selection, Elevated Synonymous Substitution Rates, Duplication, and Indel Evolution of the Chloroplast clpP1 Gene

(2008) Per Erixon et al.   PLoS One

Genome-wide analyses of Geraniaceae plastid DNA reveal unprecedented patterns of increased nucleotide substitutions

(2008) M. M. Guisinger et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA