The Complete Chloroplast Genome of Wild Rice (Oryza minuta) and Its Comparison to Related Species

Complete Chloroplast Genome of Nicotiana otophora and its Comparison with Related Species

(2016) Sajjad Asaf et al.   Frontiers in Plant Science

Mitochondrial Genome Analysis of Wild Rice (Oryza minuta) and Its Comparison with Other Related Species

(2016) Sajjad Asaf et al.   PLoS One

Temporal Dynamics of Avian Populations during Pleistocene Revealed by Whole-Genome Sequences

(2015) Krystyna Nadachowska-Brzyska et al.   CURRENT BIOLOGY

Comparative Analysis of Asteraceae Chloroplast Genomes: Structural Organization, RNA Editing and Evolution

(2015) Mengxing Wang et al.   PLANT MOLECULAR BIOLOGY REPORTER

Relationships of wild and domesticated rices (Oryza AA genome species) based upon whole chloroplast genome sequences

(2015) Peterson W. Wambugu et al.   Scientific Reports

Multiple origins of BBCC allopolyploid species in the rice genus (Oryza)

(2015) Xin-Hui Zou et al.   Scientific Reports

The complete chloroplast genome sequence of the relict woody plant Metasequoia glyptostroboides Hu et Cheng

(2015) Jinhui Chen et al.   Frontiers in Plant Science

The completed eight chloroplast genomes of tomato from Solanum genus

(2015) Zhiqiang Wu   Mitochondrial DNA Part A

Are Differences in Genomic Data Sets due to True Biological Variants or Errors in Genome Assembly: An Example from Two Chloroplast Genomes

(2015) Zhiqiang Wu et al.   PLoS One

The whole chloroplast genome of shrub willows (Salix suchowensis)

(2014) Zhiqiang Wu   Mitochondrial DNA

Direct Chloroplast Sequencing: Comparison of Sequencing Platforms and Analysis Tools for Whole Chloroplast Barcoding

(2014) Marta Brozynska et al.   PLoS One

Complete Chloroplast Genome Sequence of Poisonous and Medicinal Plant Datura stramonium: Organizations and Implications for Genetic Engineering

(2014) Yang Yang et al.   PLoS One

The tobacco genome sequence and its comparison with those of tomato and potato

(2014) Nicolas Sierro et al.   Nature Communications

The International Oryza Map Alignment Project: development of a genus-wide comparative genomics platform to help solve the 9 billion-people question

(2013) Julie Jacquemin et al.   CURRENT OPINION IN PLANT BIOLOGY

The Complete Chloroplast Genome Sequence of Cephalotaxus oliveri (Cephalotaxaceae): Evolutionary Comparison of Cephalotaxus Chloroplast DNAs and Insights into the Loss of Inverted Repeat Copies in Gymnosperms

(2013) Xuan Yi et al.   Genome Biology and Evolution

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

The Complete Chloroplast Genome Sequence of the Medicinal Plant Salvia miltiorrhiza

(2013) Jun Qian et al.   PLoS One

Complete chloroplast genome sequence of Magnolia grandiflora and comparative analysis with related species

(2013) XiWen Li et al.   Science China-Life Sciences

Development and Identification of Introgression Lines from Cross of Oryza sativa and Oryza minuta

(2013) Si-bin GUO et al.   Rice Science

Complete chloroplast genome sequence of Elodea canadensis and comparative analyses with other monocot plastid genomes

(2012) Tea Huotari et al.   GENE

Nuclear and chloroplast DNA phylogeography reveals vicariance among European populations of the model species for the study of metal tolerance, Arabidopsis halleri (Brassicaceae)

(2012) Maxime Pauwels et al.   NEW PHYTOLOGIST

Complete Chloroplast Genome Sequence of a Major Invasive Species, Crofton Weed (Ageratina adenophora)

(2012) Xiaojun Nie et al.   PLoS One

The Organelle Genomes of Hassawi Rice (Oryza sativa L.) and Its Hybrid in Saudi Arabia: Genome Variation, Rearrangement, and Origins

(2012) Tongwu Zhang et al.   PLoS One

Complete chloroplast genome sequence of Magnolia kwangsiensis (Magnoliaceae): implication for DNA barcoding and population genetics

(2011) Dai-Yong Kuang et al.   GENOME

Isolation of microsatellites from unknown genomes using known genomes as enrichment templates

(2011) Florian Leese et al.   LIMNOLOGY AND OCEANOGRAPHY-METHODS

The phylogeny of the BEP clade in grasses revisited: Evidence from the whole-genome sequences of chloroplasts

(2011) Zhi-Qiang Wu et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

The evolution of the plastid chromosome in land plants: gene content, gene order, gene function

(2011) Susann Wicke et al.   PLANT MOLECULAR BIOLOGY

Conservation of Plastid Sequences in the Plant Nuclear Genome for Millions of Years Facilitates Endosymbiotic Evolution

(2011) M. Rousseau-Gueutin et al.   PLANT PHYSIOLOGY

Plastid gene expression and plant development require a plastidic protein of the mitochondrial transcription termination factor family

(2011) E. Babiychuk et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Chloroplast genome sequence confirms distinctness of Australian and Asian wild rice

(2011) Daniel L. E. Waters et al.   Ecology and Evolution

Extreme Reconfiguration of Plastid Genomes in the Angiosperm Family Geraniaceae: Rearrangements, Repeats, and Codon Usage

(2010) M. M. Guisinger et al.   MOLECULAR BIOLOGY AND EVOLUTION

Spatio-temporal patterns of genome evolution in allotetraploid species of the genus Oryza

(2010) Jetty S. S. Ammiraju et al.   PLANT JOURNAL

The Complete Chloroplast Genome Sequence of Date Palm (Phoenix dactylifera L.)

(2010) Meng Yang et al.   PLoS One

Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots

(2010) M. J. Moore et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Complete chloroplast genome sequence of a tree fern Alsophila spinulosa: insights into evolutionary changes in fern chloroplast genomes

(2009) Lei Gao et al.   BMC EVOLUTIONARY BIOLOGY

Comparative analysis of the complete sequence of the plastid genome of Parthenium argentatum and identification of DNA barcodes to differentiate Parthenium species and lines

(2009) Shashi Kumar et al.   BMC PLANT BIOLOGY

Dynamics and evolution of the inverted repeat-large single copy junctions in the chloroplast genomes of monocots

(2008) Rui-Jiang Wang et al.   BMC EVOLUTIONARY BIOLOGY

MEGA: A biologist-centric software for evolutionary analysis of DNA and protein sequences

(2008) S. Kumar et al.   BRIEFINGS IN BIOINFORMATICS