The effect of diet on the structure of gut bacterial community of sympatric pair of whitefishes (Coregonus lavaretus): one story more

Application of stable isotopic analyses for fish host–parasite systems: an evaluation tool for parasite-mediated material flow in aquatic ecosystems

(2019) Gen Kanaya et al.   AQUATIC ECOLOGY

Variations of the intestinal gut microbiota of farmed rainbow trout, Oncorhynchus mykiss (Walbaum), depending on the infection status of the fish

(2019) A.N. Parshukov et al.   JOURNAL OF APPLIED MICROBIOLOGY

The Influence of the Gut Microbiome on Host Metabolism Through the Regulation of Gut Hormone Release

(2019) Alyce M. Martin et al.   Frontiers in Physiology

Core versus diet-associated and postprandial bacterial communities of the rainbow trout ( Oncorhynchus mykiss ) midgut and faeces

(2018) Eleni Mente et al.   Biology Open

Holobionts and ecological speciation: the intestinal microbiota of lake whitefish species pairs

(2018) Maelle Sevellec et al.   Microbiome

Diet and other environmental factors shape the bacterial communities of fish gut in an eutrophic lake

(2018) E.N. Kashinskaya et al.   JOURNAL OF APPLIED MICROBIOLOGY

Genetic Effects on the Gut Microbiota Assemblages of Hybrid Fish From Parents With Different Feeding Habits

(2018) Wuhui Li et al.   Frontiers in Microbiology

GABA-modulating bacteria of the human gut microbiota

(2018) Philip Strandwitz et al.   Nature Microbiology

Gut microbiome of juvenile coregonid fishes: comparison of sympatric species and their F1 hybrids

(2017) NataliaL. Belkova et al.   Fundamental and Applied Limnology

Dependence of pH values in the digestive tract of freshwater fishes on some abiotic and biotic factors

(2017) M. M. Solovyev et al.   HYDROBIOLOGIA

Convergence of gut microbiotas in the adaptive radiations of African cichlid fishes

(2017) Laura Baldo et al.   ISME Journal

Population-Specific Responses to Interspecific Competition in the Gut Microbiota of Two Atlantic Salmon (Salmo salar) Populations

(2017) Xiaoping He et al.   MICROBIAL ECOLOGY

High Spatial and Temporal Variations of Microbial Community along the Southern Catfish Gastrointestinal Tract: Insights into Dynamic Food Digestion

(2017) Zhimin Zhang et al.   Frontiers in Microbiology

Editorial: Bioactive Compounds from Microbes

(2017) Roberto Mazzoli et al.   Frontiers in Microbiology

Effect of Environmental Factors and an Emerging Parasitic Disease on Gut Microbiome of Wild Salmonid Fish

(2017) Anti Vasemägi et al.   mSphere

The malleable gut microbiome of juvenile rainbow trout (Oncorhynchus mykiss): Diet-dependent shifts of bacterial community structures

(2017) Stéphanie Céline Michl et al.   PLoS One

Effects of low-level dietary microalgae supplementation on the distal intestinal microbiome of farmed rainbow troutOncorhynchus mykiss(Walbaum)

(2016) Philip P Lyons et al.   AQUACULTURE RESEARCH

Characteristics of the effect of cestodes parasitizing the fish intestine on the activity of the host proteinases

(2016) G. I. Izvekova et al.   BIOLOGY BULLETIN

Phylogenetic and functional characterization of the distal intestinal microbiome of rainbow troutOncorhynchus mykissfrom both farm and aquarium settings

(2016) P.P. Lyons et al.   JOURNAL OF APPLIED MICROBIOLOGY

Speciation by Symbiosis: the Microbiome and Behavior

(2016) J. Dylan Shropshire et al.   mBio

The gut microbiome and degradation enzyme activity of wild freshwater fishes influenced by their trophic levels

(2016) Han Liu et al.   Scientific Reports

A high-resolution map of the gut microbiota in Atlantic salmon (Salmo salar): A basis for comparative gut microbial research

(2016) Karina Gajardo et al.   Scientific Reports

Inhibition of fish pathogens by the microbiota from rainbow trout ( Oncorhynchus mykiss , Walbaum) and rearing environment

(2015) Carlos Araújo et al.   ANAEROBE

Effect of dietary components on the gut microbiota of aquatic animals. A never-ending story?

(2015) E. Ringø et al.   AQUACULTURE NUTRITION

Divergence across diet, time and populations rules out parallel evolution in the gut microbiomes of Trinidadian guppies

(2015) Karen E Sullam et al.   ISME Journal

Dietary input of microbes and host genetic variation shape among-population differences in stickleback gut microbiota

(2015) Chris CR Smith et al.   ISME Journal

The biogeography of the atlantic salmon (Salmo salar) gut microbiome

(2015) Martin S Llewellyn et al.   ISME Journal

A comparative study on microbiota from the intestine of Prussian carp (Carassius gibelio) and their aquatic environmental compartments, using different molecular methods

(2015) E.N. Kashinskaya et al.   JOURNAL OF APPLIED MICROBIOLOGY

Community assembly of a euryhaline fish microbiome during salinity acclimation

(2015) Victor T. Schmidt et al.   MOLECULAR ECOLOGY

Diet strongly influences the gut microbiota of surgeonfishes

(2015) Sou Miyake et al.   MOLECULAR ECOLOGY

Gut Microbiota Dynamics during Dietary Shift in Eastern African Cichlid Fishes

(2015) Laura Baldo et al.   PLoS One

Individuals' diet diversity influences gut microbial diversity in two freshwater fish (threespine stickleback and Eurasian perch)

(2014) Daniel I. Bolnick et al.   ECOLOGY LETTERS

Rhizospheric fungal community structure of aBtbrinjal and a near isogenic variety

(2014) A.K. Singh et al.   JOURNAL OF APPLIED MICROBIOLOGY

Do the intestinal microbiotas differ between paddlefish (Polyodon spathala) and bighead carp (Aristichthys nobilis) reared in the same pond?

(2014) X.M. Li et al.   JOURNAL OF APPLIED MICROBIOLOGY

Characterization of the gut microbiota of three commercially valuable warmwater fish species

(2014) A.M. Larsen et al.   JOURNAL OF APPLIED MICROBIOLOGY

Microbiome investigation in the ecological speciation context of lake whitefish (Coregonus clupeaformis) using next-generation sequencing

(2014) M. Sevellec et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Intestinal microbiota in fishes: what's known and what's not

(2014) Kendall D. Clements et al.   MOLECULAR ECOLOGY

The Gut Microbial Community of Midas Cichlid Fish in Repeatedly Evolved Limnetic-Benthic Species Pairs

(2014) Paolo Franchini et al.   PLoS One

Individual diet has sex-dependent effects on vertebrate gut microbiota

(2014) Daniel I. Bolnick et al.   Nature Communications

Aquacultured Rainbow Trout (Oncorhynchus mykiss) Possess a Large Core Intestinal Microbiota That Is Resistant to Variation in Diet and Rearing Density

(2013) S. Wong et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Fish gut microbiota analysis differentiates physiology and behavior of invasive Asian carp and indigenous American fish

(2013) Lin Ye et al.   ISME Journal

Adaptive plasticity and genetic divergence in feeding efficiency during parallel adaptive radiation of whitefish (Coregonusspp.)

(2013) B. Lundsgaard-Hansen et al.   JOURNAL OF EVOLUTIONARY BIOLOGY

Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences

(2013) Morgan G I Langille et al.   NATURE BIOTECHNOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Use of chitin and krill in aquaculture - the effect on gut microbiota and the immune system: a review

(2012) E. Ringø et al.   AQUACULTURE NUTRITION

Enzyme-producing bacteria isolated from fish gut: a review

(2012) A.K. Ray et al.   AQUACULTURE NUTRITION

Hydrolytic activity of symbiotic microflora enzymes in pike (Esox lucius L.) intestines

(2012) G. I. Izvekova et al.   Inland Water Biology

Host species as a strong determinant of the intestinal microbiota of fish larvae

(2012) Xuemei Li et al.   JOURNAL OF MICROBIOLOGY

Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis

(2012) KAREN E. SULLAM et al.   MOLECULAR ECOLOGY

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Speciation by symbiosis

(2012) Robert M. Brucker et al.   TRENDS IN ECOLOGY & EVOLUTION

Culturable autochthonous gut bacteria in Atlantic salmon (Salmo salar L.) fed diets with or without chitin. Characterization by 16S rRNA gene sequencing, ability to produce enzymes and in vitro growth inhibition of four fish pathogens

(2011) Fatemeh Askarian et al.   AQUACULTURE

Evidence for a core gut microbiota in the zebrafish

(2011) Guus Roeselers et al.   ISME Journal

Microbial diversity of intestinal contents and mucus in yellow catfish (Pelteobagrus fulvidraco)

(2010) Shangong Wu et al.   AQUACULTURE

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Morphology and mitochondrial DNA variation of the Siberian whitefish Coregonus lavaretus pidschian (Gmelin) in the upstream water bodies of the Ob and Yenisei Rivers

(2010) Nickolai A. Bochkarev et al.   EVOLUTIONARY ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Local variation and parallel evolution: morphological and genetic diversity across a species complex of neotropical crater lake cichlid fishes

(2010) K. R. Elmer et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Characterization of the intestinal microbiota of two Antarctic notothenioid fish species

(2009) Naomi L. Ward et al.   EXTREMOPHILES