Aquacultured Rainbow Trout (Oncorhynchus mykiss) Possess a Large Core Intestinal Microbiota That Is Resistant to Variation in Diet and Rearing Density

Analyses of the Stability and Core Taxonomic Memberships of the Human Microbiome

(2013) Kelvin Li et al.   PLoS One

Comparing the effects of feeding a grain- or a fish meal-based diet on water quality, waste production, and rainbow trout Oncorhynchus mykiss performance within low exchange water recirculating aquaculture systems

(2012) John Davidson et al.   AQUACULTURAL ENGINEERING

Effects of plant-based diets on the distal gut microbiome of rainbow trout (Oncorhynchus mykiss)

(2012) Atul R. Desai et al.   AQUACULTURE

Microbiota Regulate Intestinal Absorption and Metabolism of Fatty Acids in the Zebrafish

(2012) Ivana Semova et al.   Cell Host & Microbe

Daily follow-up of bacterial communities in the human gut reveals stable composition and host-specific patterns of interaction

(2012) Ana Durbán et al.   FEMS MICROBIOLOGY ECOLOGY

Environmental and ecological factors that shape the gut bacterial communities of fish: a meta-analysis

(2012) KAREN E. SULLAM et al.   MOLECULAR ECOLOGY

PCR-TTGE Analysis of 16S rRNA from Rainbow Trout (Oncorhynchus mykiss) Gut Microbiota Reveals Host-Specific Communities of Active Bacteria

(2012) Paola Navarrete et al.   PLoS One

Animal behaviour meets microbial ecology

(2011) Elizabeth A. Archie et al.   ANIMAL BEHAVIOUR

Beyond the Venn diagram: the hunt for a core microbiome

(2011) Ashley Shade et al.   ENVIRONMENTAL MICROBIOLOGY

Selective and differential enumerations of Lactobacillus delbrueckii subsp. bulgaricus, Streptococcus thermophilus, Lactobacillus acidophilus, Lactobacillus casei and Bifidobacterium spp. in yoghurt — A review

(2011) Rabia Ashraf et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Evidence for a core gut microbiota in the zebrafish

(2011) Guus Roeselers et al.   ISME Journal

Normal gut microbiota modulates brain development and behavior

(2011) R. D. Heijtz et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Metagenomic biomarker discovery and explanation

(2011) Nicola Segata et al.   GENOME BIOLOGY

Characterization of rainbow trout (Oncorhynchus mykiss) intestinal microbiota and inflammatory marker gene expression in a recirculating aquaculture system

(2010) Graeme S. Mansfield et al.   AQUACULTURE

Role of gastrointestinal microbiota in fish

(2010) Sukanta K Nayak   AQUACULTURE RESEARCH

Relating Instrumental Texture, Determined by Variable-Blade and Allo-Kramer Shear Attachments, to Sensory Analysis of Rainbow Trout, Oncorhynchus mykiss, Fillets

(2010) Aunchalee Aussanasuwannakul et al.   JOURNAL OF FOOD SCIENCE

Rapidly denoising pyrosequencing amplicon reads by exploiting rank-abundance distributions

(2010) Jens Reeder et al.   NATURE METHODS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Site and Strain-Specific Variation in Gut Microbiota Profiles and Metabolism in Experimental Mice

(2010) Melissa K. Friswell et al.   PLoS One

Metabolic Syndrome and Altered Gut Microbiota in Mice Lacking Toll-Like Receptor 5

(2010) M. Vijay-Kumar et al.   SCIENCE

Microbial community diversity associated with the intestinal mucosa of farmed rainbow trout (Oncoryhnchus mykissWalbaum)

(2009) Daniel L Merrifield et al.   AQUACULTURE RESEARCH

PyNAST: a flexible tool for aligning sequences to a template alignment

(2009) J. G. Caporaso et al.   BIOINFORMATICS

Induction of Intestinal Th17 Cells by Segmented Filamentous Bacteria

(2009) Ivaylo I. Ivanov et al.   CELL

Molecular analysis of intestinal microbiota of rainbow trout (Oncorhynchus mykiss)

(2009) Paola Navarrete et al.   FEMS MICROBIOLOGY ECOLOGY

Dietary mannan oligosaccharide supplementation modulates intestinal microbial ecology and improves gut morphology of rainbow trout, Oncorhynchus mykiss (Walbaum)

(2009) A. Dimitroglou et al.   JOURNAL OF ANIMAL SCIENCE

Diet-Induced Obesity Is Linked to Marked but Reversible Alterations in the Mouse Distal Gut Microbiome

(2008) Peter J. Turnbaugh et al.   Cell Host & Microbe

Apparent Digestibility of Gross Nutrients from Feedstuffs in Extruded Feeds for Rainbow Trout,Oncorhynchus mykiss

(2008) T. Gibson Gaylord et al.   JOURNAL OF THE WORLD AQUACULTURE SOCIETY