Genome Synteny Has Been Conserved Among the Octoploid Progenitors of Cultivated Strawberry Over Millions of Years of Evolution

Genomic Prediction of Autotetraploids; Influence of Relationship Matrices, Allele Dosage, and Continuous Genotyping Calls in Phenotype Prediction

(2019) Ivone de Bem Oliveira et al.   G3-Genes Genomes Genetics

Origin and evolution of the octoploid strawberry genome

(2019) Patrick P. Edger et al.   NATURE GENETICS

Origin and Evolution of Diploid and Allopolyploid Camelina Genomes was Accompanied by Chromosome Shattering

(2019) Terezie Mandáková et al.   PLANT CELL

Comparative linkage mapping of diploid, tetraploid, and hexaploid Avena species suggests extensive chromosome rearrangement in ancestral diploids

(2019) Robert G. Latta et al.   Scientific Reports

The causes and consequences of subgenome dominance in hybrids and recent polyploids

(2018) Kevin A. Bird et al.   NEW PHYTOLOGIST

Genome-Wide Association Mapping Uncovers Fw1 , a Dominant Gene Conferring Resistance to Fusarium Wilt in Strawberry

(2018) Dominique D. A. Pincot et al.   G3-Genes Genomes Genetics

Repeated translocation of a gene cassette drives sex-chromosome turnover in strawberries

(2018) Jacob A. Tennessen et al.   PLOS BIOLOGY

A near complete, chromosome-scale assembly of the black raspberry (Rubus occidentalis) genome

(2018) Robert VanBuren et al.   GigaScience

Karyotype Stability and Unbiased Fractionation in the Paleo-Allotetraploid Cucurbita Genomes

(2017) Honghe Sun et al.   Molecular Plant

BatchMap: A parallel implementation of the OneMap R package for fast computation of F1 linkage maps in outcrossing species

(2017) Bastian Schiffthaler et al.   PLoS One

Genome diversity of tuber-bearingSolanumuncovers complex evolutionary history and targets of domestication in the cultivated potato

(2017) Michael A. Hardigan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genotyping-by-sequencing enables linkage mapping in three octoploid cultivated strawberry families

(2017) Kelly J. Vining et al.   PeerJ

Single-molecule sequencing and optical mapping yields an improved genome of woodland strawberry (Fragaria vesca) with chromosome-scale contiguity

(2017) Patrick P Edger et al.   GigaScience

Polyploidy: Pitfalls and paths to a paradigm

(2016) Douglas E. Soltis et al.   AMERICAN JOURNAL OF BOTANY

A phylogenomic assessment of ancient polyploidy and genome evolution across the Poales

(2016) Michael R. McKain et al.   Genome Biology and Evolution

TERMINAL FLOWER1is a breeding target for a novel everbearing trait and tailored flowering responses in cultivated strawberry (Fragaria × ananassaDuch.)

(2016) Elli Aurora Koskela et al.   PLANT BIOTECHNOLOGY JOURNAL

HaploSNP affinities and linkage map positions illuminate subgenome composition in the octoploid, cultivated strawberry ( Fragaria×ananassa )

(2016) D.J. Sargent et al.   PLANT SCIENCE

Comparative Transcriptomics of Strawberries (Fragaria spp.) Provides Insights into Evolutionary Patterns

(2016) Qin Qiao et al.   Frontiers in Plant Science

Comparison of nuclear, plastid, and mitochondrial phylogenies and the origin of wild octoploid strawberry species

(2015) Rajanikanth Govindarajulu et al.   AMERICAN JOURNAL OF BOTANY

Development and preliminary evaluation of a 90 K Axiom® SNP array for the allo-octoploid cultivated strawberry Fragaria × ananassa

(2015) Nahla V Bassil et al.   BMC GENOMICS

Speciation by genome duplication: Repeated origins and genomic composition of the recently formed allopolyploid species Mimulus peregrinus

(2015) Mario Vallejo-Marín et al.   EVOLUTION

A ddRAD Based Linkage Map of the Cultivated Strawberry, Fragaria xananassa

(2015) Jahn Davik et al.   PLoS One

Fragaria : A genus with deep historical roots and ripe for evolutionary and ecological insights

(2014) Aaron Liston et al.   AMERICAN JOURNAL OF BOTANY

Doubling down on genomes: Polyploidy and crop plants

(2014) Simon Renny-Byfield et al.   AMERICAN JOURNAL OF BOTANY

The role of homoploid hybridization in evolution: A century of studies synthesizing genetics and ecology

(2014) S. B. Yakimowski et al.   AMERICAN JOURNAL OF BOTANY

Genomic rearrangements and signatures of breeding in the allo-octoploid strawberry as revealed through an allele dose based SSR linkage map

(2014) Thijs van Dijk et al.   BMC PLANT BIOLOGY

Chromosomal Evolution and Patterns of Introgression in Helianthus

(2014) J. G. Barb et al.   GENETICS

Evolutionary Origins and Dynamics of Octoploid Strawberry Subgenomes Revealed by Dense Targeted Capture Linkage Maps

(2014) Jacob A. Tennessen et al.   Genome Biology and Evolution

Are polyploids really evolutionary dead-ends (again)? A critical reappraisal of Mayroseet al. (2011)

(2014) Douglas E. Soltis et al.   NEW PHYTOLOGIST

Polyploidy and novelty: Gottlieb's legacy

(2014) Pamela S. Soltis et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Floral Transcriptomes in Woodland Strawberry Uncover Developing Receptacle and Anther Gene Networks

(2014) C. A. Hollender et al.   PLANT PHYSIOLOGY

Transcriptome and methylome profiling reveals relics of genome dominance in the mesopolyploid Brassica oleracea

(2014) Isobel AP Parkin et al.   GENOME BIOLOGY

Bioclimatic, ecological, and phenotypic intermediacy and high genetic admixture in a natural hybrid of octoploid strawberries

(2013) Isabella Salamone et al.   AMERICAN JOURNAL OF BOTANY

Tapping the Promise of Genomics in Species with Complex, Nonmodel Genomes

(2013) Candice N. Hirsch et al.   Annual Review of Plant Biology

Dissection of the Octoploid Strawberry Genome by Deep Sequencing of the Genomes of Fragaria Species

(2013) H. Hirakawa et al.   DNA RESEARCH

Evolution of crop species: genetics of domestication and diversification

(2013) Rachel S. Meyer et al.   NATURE REVIEWS GENETICS

Genome-Scale Transcriptomic Insights into Early-Stage Fruit Development in Woodland Strawberry Fragaria vesca

(2013) C. Kang et al.   PLANT CELL

Insights into the Evolution of Cotton Diploids and Polyploids from Whole-Genome Re-sequencing

(2013) Justin T. Page et al.   G3-Genes Genomes Genetics

Genomic dark matter: the reliability of short read mapping illustrated by the genome mappability score

(2012) Hayan Lee et al.   BIOINFORMATICS

Insights into phylogeny, sex function and age of Fragaria based on whole chloroplast genome sequencing

(2012) Wambui Njuguna et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Comparative population genomics of maize domestication and improvement

(2012) Matthew B Hufford et al.   NATURE GENETICS

Homoeolog expression bias and expression level dominance in allopolyploids

(2012) C. E. Grover et al.   NEW PHYTOLOGIST

MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

(2012) Y. Wang et al.   NUCLEIC ACIDS RESEARCH

Characteristics of F1 Hybrids and Inbred lines in Octoploid Strawberry (Fragaria × ananassa Duchesne)

(2012) Il Rae Rho et al.   PLANT BREEDING

Advances in plant genome sequencing

(2012) John P. Hamilton et al.   PLANT JOURNAL

Extensive chromosomal variation in a recently formed natural allopolyploid species, Tragopogon miscellus (Asteraceae)

(2012) M. Chester et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A microsatellite linkage map for the cultivated strawberry (Fragaria × ananassa) suggests extensive regions of homozygosity in the genome that may have resulted from breeding and selection

(2012) D. J. Sargent et al.   THEORETICAL AND APPLIED GENETICS

Current challenges in de novo plant genome sequencing and assembly

(2012) Michael C Schatz et al.   GENOME BIOLOGY

From forest to field: Perennial fruit crop domestication

(2011) Allison J. Miller et al.   AMERICAN JOURNAL OF BOTANY

Ancestral polyploidy in seed plants and angiosperms

(2011) Yuannian Jiao et al.   NATURE

Repetitive DNA and next-generation sequencing: computational challenges and solutions

(2011) Todd J. Treangen et al.   NATURE REVIEWS GENETICS

Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss

(2011) J. C. Schnable et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Comparative Mapping Reveals Autosomal Origin of Sex Chromosome in Octoploid Fragaria virginiana

(2010) Rachel B. Spigler et al.   JOURNAL OF HEREDITY

The genome of woodland strawberry (Fragaria vesca)

(2010) Vladimir Shulaev et al.   NATURE GENETICS

High-throughput genotyping by whole-genome resequencing

(2009) X. Huang et al.   GENOME RESEARCH

Making a functional diploid: from polysomic to disomic inheritance

(2009) S. C. Le Comber et al.   NEW PHYTOLOGIST

Homoeologous recombination in allopolyploids: the polyploid ratchet

(2009) Robert T. Gaeta et al.   NEW PHYTOLOGIST

Genetic regulation of meiosis in polyploid species: new insights into an old question

(2009) Marta Cifuentes et al.   NEW PHYTOLOGIST

Comparative Genetic Mapping Between Octoploid and Diploid Fragaria Species Reveals a High Level of Colinearity Between Their Genomes and the Essentially Disomic Behavior of the Cultivated Octoploid Strawberry

(2008) M. Rousseau-Gueutin et al.   GENETICS

Genetic mapping of sex determination in a wild strawberry, Fragaria virginiana, reveals earliest form of sex chromosome

(2008) R B Spigler et al.   HEREDITY

Genomic Plasticity and the Diversity of Polyploid Plants

(2008) A. R. Leitch et al.   SCIENCE