Comparative Transcriptomics of Strawberries (Fragaria spp.) Provides Insights into Evolutionary Patterns

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

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HaploSNP affinities and linkage map positions illuminate subgenome composition in the octoploid, cultivated strawberry ( Fragaria×ananassa )

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Dissecting Molecular Evolution in the Highly Diverse Plant Clade Caryophyllales Using Transcriptome Sequencing

(2015) Ya Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Fragaria : A genus with deep historical roots and ripe for evolutionary and ecological insights

(2014) Aaron Liston et al.   AMERICAN JOURNAL OF BOTANY

The role of the uplift of the Qinghai-Tibetan Plateau for the evolution of Tibetan biotas

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Bioclimatic evaluation of geographical range inFragaria(Rosaceae): consequences of variation in breeding system, ploidy and species age

(2014) Anna L. Johnson et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Evolutionary Origins and Dynamics of Octoploid Strawberry Subgenomes Revealed by Dense Targeted Capture Linkage Maps

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Rapid diversification of fiveOryzaAA genomes associated with rice adaptation

(2014) Qun-Jie Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolutionary history and underlying adaptation of alpine plants on the Qinghai-Tibet Plateau

(2014) Jian-Quan LIU et al.   Journal of Systematics and Evolution

The complex jujube genome provides insights into fruit tree biology

(2014) Meng-Jun Liu et al.   Nature Communications

Evolutionary diversifications of plants on the Qinghai-Tibetan Plateau

(2014) Jun Wen et al.   Frontiers in Genetics

Dissection of the Octoploid Strawberry Genome by Deep Sequencing of the Genomes of Fragaria Species

(2013) H. Hirakawa et al.   DNA RESEARCH

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Genome-Scale Transcriptomic Insights into Early-Stage Fruit Development in Woodland Strawberry Fragaria vesca

(2013) C. Kang et al.   PLANT CELL

Comparative transcriptomics reveals patterns of selection in domesticated and wild tomato

(2013) D. Koenig et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Strategies for transcriptome analysis in nonmodel plants

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The expression profiling of the CsPYL, CsPP2C and CsSnRK2 gene families during fruit development and drought stress in cucumber

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Speciation in theRana chensinensisspecies complex and its relationship to the uplift of the Qinghai-Tibetan Plateau

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Insights into phylogeny, sex function and age of Fragaria based on whole chloroplast genome sequencing

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Estimating divergence times in large molecular phylogenies

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(2012) Jian-Quan LIU et al.   Journal of Systematics and Evolution

Full-length transcriptome assembly from RNA-Seq data without a reference genome

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KOBAS 2.0: a web server for annotation and identification of enriched pathways and diseases

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Direct targets of the transcription factors ABA-Insensitive(ABI)4 and ABI5 reveal synergistic action by ABI4 and several bZIP ABA response factors

(2011) Wendy M. Reeves et al.   PLANT MOLECULAR BIOLOGY

Abscisic Acid Plays an Important Role in the Regulation of Strawberry Fruit Ripening

(2011) Hai-Feng Jia et al.   PLANT PHYSIOLOGY

The genome of woodland strawberry (Fragaria vesca)

(2010) Vladimir Shulaev et al.   NATURE GENETICS

agriGO: a GO analysis toolkit for the agricultural community

(2010) Zhou Du et al.   NUCLEIC ACIDS RESEARCH

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Molecular evolution of the Bovini tribe (Bovidae, Bovinae): Is there evidence of rapid evolution or reduced selective constraint in Domestic cattle?

(2009) Sean MacEachern et al.   BMC GENOMICS

Tracking the evolutionary history of polyploidy in Fragaria L. (strawberry): New insights from phylogenetic analyses of low-copy nuclear genes

(2009) M. Rousseau-Gueutin et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Abscisic Acid Inhibits Type 2C Protein Phosphatases via the PYR/PYL Family of START Proteins

(2009) S.-Y. Park et al.   SCIENCE

Integration of light and abscisic acid signaling during seed germination and early seedling development

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