IS26-Mediated Transfer of blaNDM–1 as the Main Route of Resistance Transmission During a Polyclonal, Multispecies Outbreak in a German Hospital

Plasmid-Mediated Transmission of KPC-2 Carbapenemase in Enterobacteriaceae in Critically Ill Patients

(2019) Christian Schweizer et al.   Frontiers in Microbiology

The successful containment of a hospital outbreak caused by NDM-1-producing Klebsiella pneumoniae ST307 using active surveillance

(2019) Paola Bocanegra-Ibarias et al.   PLoS One

A major monoclonal hospital outbreak of NDM-1–producing Klebsiella pneumoniae ST340 and the first report of ST2570 in Brazil

(2019) Jussimara Monteiro et al.   INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY

Emergence of NDM-1-producing Klebsiella pneumoniae in Greece: evidence of a widespread clonal outbreak

(2019) Lida Politi et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Outbreak of NDM-1+CTX-M-15+DHA-1-producing Klebsiella pneumoniae high-risk clone in Spain owing to an undetectable colonised patient from Pakistan

(2019) Marta Hernández-García et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

OUP accepted manuscript

(2018)   CLINICAL INFECTIOUS DISEASES

Treatment of Infections Caused by Extended-Spectrum-Beta-Lactamase-, AmpC-, and Carbapenemase-Producing Enterobacteriaceae

(2018) Jesús Rodríguez-Baño et al.   CLINICAL MICROBIOLOGY REVIEWS

Plasmids carrying antimicrobial resistance genes in Enterobacteriaceae

(2018) M Rozwandowicz et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Whole-Genome Sequencing of Recent Listeria monocytogenes Isolates from Germany Reveals Population Structure and Disease Clusters

(2018) Sven Halbedel et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Cryptic transmission of ST405 Escherichia coli carrying bla NDM-4 in hospital

(2018) Xiaoxia Zhang et al.   Scientific Reports

Whole Genome Sequence Analysis of CTX-M-15 Producing Klebsiella Isolates Allowed Dissecting a Polyclonal Outbreak Scenario

(2018) Laura Becker et al.   Frontiers in Microbiology

Genome-based analysis of Carbapenemase-producing Klebsiella pneumoniae isolates from German hospital patients, 2008-2014

(2018) Laura Becker et al.   Antimicrobial Resistance and Infection Control

Whole genome analyses of CMY-2-producing Escherichia coli isolates from humans, animals and food in Germany

(2018) Michael Pietsch et al.   BMC GENOMICS

Successful control of the first OXA-48 and/or NDM carbapenemase-producing Klebsiella pneumoniae outbreak in Slovenia 2014–2016

(2018) M. Pirš et al.   JOURNAL OF HOSPITAL INFECTION

Outbreak of NDM-1-Producing Klebsiella pneumoniae in a Dutch Hospital, with Interspecies Transfer of the Resistance Plasmid and Unexpected Occurrence in Unrelated Health Care Centers

(2017) Thijs Bosch et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Outbreak of Enterobacter cloacae with New Delhi metallo-β-lactamase (NDM)-1: challenges in epidemiological investigation and environmental decontamination

(2017) N. Mahida et al.   JOURNAL OF HOSPITAL INFECTION

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

(2017) Ryan R. Wick et al.   PLoS Computational Biology

Mechanisms Involved in Acquisition ofblaNDMGenes by IncA/C2and IncFIIYPlasmids

(2016) Alexander M. Wailan et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Local transmission and global dissemination of New Delhi Metallo-Beta-Lactamase (NDM): a whole genome analysis

(2016) Wei Xin Khong et al.   BMC GENOMICS

Outbreak of NDM-1-producing Klebsiella pneumoniae ST76 and ST37 isolates in neonates

(2016) J. Zhu et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Overcoming β-lactam resistance in Gram-negative pathogens

(2016) Karen Bush   Future Medicinal Chemistry

NDM-producing Enterobacteriaceae in Poland, 2012–14: inter-regional outbreak ofKlebsiella pneumoniaeST11 and sporadic cases

(2015) A. Baraniak et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Application of Whole-Genome Sequencing for Bacterial Strain Typing in Molecular Epidemiology

(2015) Stephen J. Salipante et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Emerging Issues in Gram-Negative Bacterial Resistance

(2015) Shawn Vasoo et al.   MAYO CLINIC PROCEEDINGS

The A to Z of A/C plasmids

(2015) Christopher J. Harmer et al.   PLASMID

Outbreak of Multidrug Resistant NDM-1-Producing Klebsiella pneumoniae from a Neonatal Unit in Shandong Province, China

(2015) Yan Jin et al.   PLoS One

Mechanisms of antimicrobial resistance in Gram-negative bacilli

(2015) Étienne Ruppé et al.   Annals of Intensive Care

In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

(2014) Alessandra Carattoli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Outbreak of an armA Methyltransferase-Producing ST39 Klebsiella pneumoniae Clone in a Pediatric Algerian Hospital

(2014) Zineb Belbel et al.   Microbial Drug Resistance

Worldwide Dissemination of the NDM-Type Carbapenemases in Gram-Negative Bacteria

(2014) Laurent Dortet et al.   Biomed Research International

Kraken: ultrafast metagenomic sequence classification using exact alignments

(2014) Derrick E Wood et al.   GENOME BIOLOGY

Hygienemaßnahmen bei Infektionen oder Besiedlung mit multiresistenten gramnegativen Stäbchen

(2012)   Bundesgesundheitsblatt-Gesundheitsforschung-Gesundheitsschutz

Outbreak of Carbapenem-Resistant Enterobacteriaceae Containing blaNDM-1, Ontario, Canada

(2012) S. Borgia et al.   CLINICAL INFECTIOUS DISEASES

Identification of acquired antimicrobial resistance genes

(2012) E. Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Carbapenem antibiotics for serious infections

(2012) P. M. Hawkey et al.   BMJ-British Medical Journal

Molecular characterization of blaNDM-1 in an Acinetobacter baumannii strain isolated in Germany in 2007

(2011) Yvonne Pfeifer et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Comparative Genomics of Multidrug Resistance-Encoding IncA/C Plasmids from Commensal and Pathogenic Escherichia coli from Multiple Animal Sources

(2011) Claudia Fernández-Alarcón et al.   PLoS One

The emerging NDM carbapenemases

(2011) Patrice Nordmann et al.   TRENDS IN MICROBIOLOGY

Resistance to cephalosporins and carbapenems in Gram-negative bacterial pathogens

(2010) Yvonne Pfeifer et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Characterization of a New Metallo- -Lactamase Gene, blaNDM-1, and a Novel Erythromycin Esterase Gene Carried on a Unique Genetic Structure in Klebsiella pneumoniae Sequence Type 14 from India

(2009) D. Yong et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Emergence of carbapenem-non-susceptible extended-spectrum  -lactamase-producing Klebsiella pneumoniae isolates at the university hospital of Tubingen, Germany

(2009) S. Grobner et al.   JOURNAL OF MEDICAL MICROBIOLOGY