Cryptic transmission of ST405 Escherichia coli carrying bla NDM-4 in hospital

Prevalence and genetic characteristics of carbapenem-resistant Enterobacteriaceae strains in China

(2017) Rong Zhang et al.   LANCET INFECTIOUS DISEASES

NDM-4- and NDM-5-Producing Klebsiella pneumoniae Coinfection in a 6-Month-Old Infant

(2016) Hazim O. Khalifa et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Molecular Epidemiology and Genome Dynamics of New Delhi Metallo-β-Lactamase-Producing Extraintestinal Pathogenic Escherichia coli Strains from India

(2016) Amit Ranjan et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

The use of whole-genome sequencing for molecular epidemiology and antimicrobial surveillance: identifying the role of IncX3 plasmids and the spread ofblaNDM-4-like genes in the Enterobacteriaceae

(2015) Björn A Espedido et al.   JOURNAL OF CLINICAL PATHOLOGY

Poretools: a toolkit for analyzing nanopore sequence data

(2014) N. J. Loman et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Identification of a New Delhi metallo-β-lactamase-4 (NDM-4)-producing Escherichia coli in Italy

(2014) Erika Coppo et al.   BMC MICROBIOLOGY

Detection of blaNDM-4 in Escherichia coli from hospital sewage

(2014) A. U. Khan et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

(2014) Nicholas J. Croucher et al.   NUCLEIC ACIDS RESEARCH

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

An ST405 NDM-4-producing Escherichia coli isolated from a Danish patient previously hospitalized in Vietnam

(2013) L. Jakobsen et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

blaNDM-1-carrying Acinetobacter johnsonii detected in hospital sewage

(2013) Z. Zong et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

NDM-4 Metallo-β-Lactamase with Increased Carbapenemase Activity from Escherichia coli

(2012) Patrice Nordmann et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

Replicon sequence typing of IncF plasmids carrying virulence and resistance determinants

(2010) Laura Villa et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY