Whole Genome Sequence Analysis of CTX-M-15 Producing Klebsiella Isolates Allowed Dissecting a Polyclonal Outbreak Scenario
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Whole Genome Sequence Analysis of CTX-M-15 Producing Klebsiella Isolates Allowed Dissecting a Polyclonal Outbreak Scenario
Authors
Keywords
-
Journal
Frontiers in Microbiology
Volume 9, Issue -, Pages -
Publisher
Frontiers Media SA
Online
2018-02-23
DOI
10.3389/fmicb.2018.00322
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Identification of a novel transposon-associated phosphoethanolamine transferase gene, mcr-5, conferring colistin resistance in d-tartrate fermenting Salmonella enterica subsp. enterica serovar Paratyphi B
- (2017) Maria Borowiak et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Whole-Genome Sequencing of Human Clinical Klebsiella pneumoniae Isolates Reveals Misidentification and Misunderstandings of Klebsiella pneumoniae , Klebsiella variicola , and Klebsiella quasipneumoniae
- (2017) S. Wesley Long et al. mSphere
- Amino Acid Substitutions of CrrB Responsible for Resistance to Colistin through CrrC in Klebsiella pneumoniae
- (2016) Yi-Hsiang Cheng et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Nested Russian Doll-Like Genetic Mobility Drives Rapid Dissemination of the Carbapenem Resistance GeneblaKPC
- (2016) Anna E. Sheppard et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Identification of a novel plasmid-mediated colistin-resistance gene,mcr-2, inEscherichia coli, Belgium, June 2016
- (2016) Basil Britto Xavier et al. Eurosurveillance
- Characterization of an outbreak due to CTX-M-15-producingKlebsiella pneumoniaelacking theblaOXA-48gene belonging to clone ST405 in a neonatal unit in southern Spain
- (2016) Jesús Machuca et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Comprehensive clinical and epidemiological assessment of colonisation and infection due to carbapenemase-producing Enterobacteriaceae in Spain
- (2016) Zaira R. Palacios-Baena et al. JOURNAL OF INFECTION
- Colistin resistance gene mcr-1 in extended-spectrum β-lactamase-producing and carbapenemase-producing Gram-negative bacteria in Germany
- (2016) Linda Falgenhauer et al. LANCET INFECTIOUS DISEASES
- Emergence of plasmid-mediated colistin resistance mechanism MCR-1 in animals and human beings in China: a microbiological and molecular biological study
- (2016) Yi-Yun Liu et al. LANCET INFECTIOUS DISEASES
- PHASTER: a better, faster version of the PHAST phage search tool
- (2016) David Arndt et al. NUCLEIC ACIDS RESEARCH
- Use of whole-genome sequencing to trace, control and characterize the regional expansion of extended-spectrum β-lactamase producing ST15 Klebsiella pneumoniae
- (2016) Kai Zhou et al. Scientific Reports
- Outbreaks of extended spectrum beta-lactamase-producing Enterobacteriaceae in neonatal intensive care units: a systematic review
- (2015) Patrick JM Stapleton et al. Archives of Disease in Childhood-Fetal and Neonatal Edition
- Molecular epidemiology and characterization of an outbreak causing Klebsiella pneumoniae clone carrying chromosomally located bla CTX-M-15 at a German University-Hospital
- (2015) Stephen E. Mshana et al. BMC MICROBIOLOGY
- Development of a Multiplex-PCR probe system for the proper identification of Klebsiella variicola
- (2015) Ulises Garza-Ramos et al. BMC MICROBIOLOGY
- Molecular epidemiology of carbapenem resistant Enterobacteriaceae in Valle d’Aosta region, Italy, shows the emergence of KPC-2 producing Klebsiella pneumoniae clonal complex 101 (ST101 and ST1789)
- (2015) Mariateresa Del Franco et al. BMC MICROBIOLOGY
- A high-resolution genomic analysis of multidrug-resistant hospital outbreaks of Klebsiella pneumoniae
- (2015) H. Chung The et al. EMBO Molecular Medicine
- Deep transcriptome profiling of clinicalKlebsiella pneumoniaeisolates reveals strain and sequence type-specific adaptation
- (2015) Sebastian Bruchmann et al. ENVIRONMENTAL MICROBIOLOGY
- The changing epidemiology of hospital outbreaks due to ESBL-producing Klebsiella pneumoniae: the CTX-M-15 type consolidation
- (2015) Esther Calbo et al. Future Microbiology
- A single-day point-prevalence study of faecal carriers in long-term care hospitals in Madrid (Spain) depicts a complex clonal and polyclonal dissemination of carbapenemase-producing Enterobacteriaceae
- (2015) Patricia Ruiz-Garbajosa et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- What caused the outbreak of ESBL-producing Klebsiella pneumoniae in a neonatal intensive care unit, Germany 2009 to 2012? Reconstructing transmission with epidemiological analysis and whole-genome sequencing
- (2015) S. Haller et al. BMJ Open
- Characterization of a CTX-M-15 Producing Klebsiella Pneumoniae Outbreak Strain Assigned to a Novel Sequence Type (1427)
- (2015) Kai Zhou et al. Frontiers in Microbiology
- Genome Sequencing of an Extended Series of NDM-Producing Klebsiella pneumoniae Isolates from Neonatal Infections in a Nepali Hospital Characterizes the Extent of Community- versus Hospital-Associated Transmission in an Endemic Setting
- (2014) N. Stoesser et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Genomic and Transcriptomic Analyses of Colistin-Resistant Clinical Isolates of Klebsiella pneumoniae Reveal Multiple Pathways of Resistance
- (2014) Meredith S. Wright et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data
- (2014) David Coil et al. BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Molecular epidemiology of OXA-48-producing Klebsiella pneumoniae in France
- (2014) E. Liapis et al. CLINICAL MICROBIOLOGY AND INFECTION
- Worldwide emergence of colistin resistance in Klebsiella pneumoniae from healthy humans and patients in Lao PDR, Thailand, Israel, Nigeria and France owing to inactivation of the PhoP/PhoQ regulator mgrB: an epidemiological and molecular study
- (2014) Abiola Olumuyiwa Olaitan et al. INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS
- Expansion of ESBL-producing Klebsiella pneumoniae in hospitalized patients: A successful story of international clones (ST15, ST147, ST336) and epidemic plasmids (IncR, IncFII K )
- (2014) Carla Rodrigues et al. INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY
- Description of Klebsiella quasipneumoniae sp. nov., isolated from human infections, with two subspecies, Klebsiella quasipneumoniae subsp. quasipneumoniae subsp. nov. and Klebsiella quasipneumoniae subsp. similipneumoniae subsp. nov., and demonstration that Klebsiella singaporensis is a junior heterotypic synonym of Klebsiella variicola
- (2014) S. Brisse et al. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY
- The mgrB gene as a key target for acquired resistance to colistin in Klebsiella pneumoniae
- (2014) L. Poirel et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Enterobacteriaceae isolates carrying the New Delhi metallo- -lactamase gene in Yemen
- (2014) A. Gharout-Sait et al. JOURNAL OF MEDICAL MICROBIOLOGY
- Development of a multiplex PCR assay for identification of Klebsiella pneumoniae hypervirulent clones of capsular serotype K2
- (2014) S. Bialek-Davenet et al. JOURNAL OF MEDICAL MICROBIOLOGY
- Identification of enterotoxigenic Escherichia coli (ETEC) clades with long-term global distribution
- (2014) Astrid von Mentzer et al. NATURE GENETICS
- Resistance Determinants and Mobile Genetic Elements of an NDM-1-Encoding Klebsiella pneumoniae Strain
- (2014) Corey M. Hudson et al. PLoS One
- Klebsiella variicola Is a Frequent Cause of Bloodstream Infection in the Stockholm Area, and Associated with Higher Mortality Compared to K. pneumoniae
- (2014) Makaoui Maatallah et al. PLoS One
- Mechanisms of polymyxin resistance: acquired and intrinsic resistance in bacteria
- (2014) Abiola O. Olaitan et al. Frontiers in Microbiology
- Genomic analysis of the emergence and evolution of multidrug resistance during a Klebsiella pneumoniae outbreak including carbapenem and colistin resistance
- (2013) E. Lopez-Camacho et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- wzi Gene Sequencing, a Rapid Method for Determination of Capsular Type for Klebsiella Strains
- (2013) S. Brisse et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data
- (2012) M. Kearse et al. BIOINFORMATICS
- Klebsiella pneumoniae resistant to third-generation cephalosporins in five African and two Vietnamese major towns: multiclonal population structure with two major international clonal groups, CG15 and CG258
- (2012) S. Breurec et al. CLINICAL MICROBIOLOGY AND INFECTION
- Spread of an OmpK36-modified ST15 Klebsiella pneumoniae variant during an outbreak involving multiple carbapenem-resistant Enterobacteriaceae species and clones
- (2012) Â. Novais et al. EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES
- VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
- (2012) D. C. Koboldt et al. GENOME RESEARCH
- Identification of acquired antimicrobial resistance genes
- (2012) E. Zankari et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria
- (2012) M. V. Larsen et al. JOURNAL OF CLINICAL MICROBIOLOGY
- ART: a next-generation sequencing read simulator
- (2011) Weichun Huang et al. BIOINFORMATICS
- High prevalence of CTX-M-15-producing Klebsiella pneumoniae isolates in Asian countries: diverse clones and clonal dissemination
- (2011) Mi Young Lee et al. INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS
- Rapid emergence and spread of OXA-48-producing carbapenem-resistant Enterobacteriaceae isolates in Belgian hospitals
- (2011) Youri Glupczynski et al. INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS
- Search and clustering orders of magnitude faster than BLAST
- (2010) Robert C. Edgar BIOINFORMATICS
- Prodigal: prokaryotic gene recognition and translation initiation site identification
- (2010) Doug Hyatt et al. BMC BIOINFORMATICS
- Characterisation of the CTX-M-15-encoding gene in Klebsiella pneumoniae strains from the Barcelona metropolitan area: plasmid diversity and chromosomal integration
- (2010) Alicia Coelho et al. INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- PLAST: parallel local alignment search tool for database comparison
- (2009) Van Hoa Nguyen et al. BMC BIOINFORMATICS
- Extended-spectrum β-lactamases and the permeability barrier
- (2008) L. Martínez-Martínez CLINICAL MICROBIOLOGY AND INFECTION
- Expansion and countrywide dissemination of ST11, ST15 and ST147 ciprofloxacin-resistant CTX-M-15-type -lactamase-producing Klebsiella pneumoniae epidemic clones in Hungary in 2005--the new 'MRSAs'?
- (2008) I. Damjanova et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search