Genome-based analysis of Carbapenemase-producing Klebsiella pneumoniae isolates from German hospital patients, 2008-2014

Stalking a lethal superbug by whole-genome sequencing and phylogenetics: Influence on unraveling a major hospital outbreak of carbapenem-resistant Klebsiella pneumoniae

(2018) Thorsten Kaiser et al.   AMERICAN JOURNAL OF INFECTION CONTROL

Monitoring microevolution of OXA-48-producing Klebsiella pneumoniae ST147 in a hospital setting by SMRT sequencing

(2017) Andreas E Zautner et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Chromosomal Integration of the Klebsiella pneumoniae Carbapenemase Gene, bla KPC , in Klebsiella Species Is Elusive but Not Rare

(2016) Amy J. Mathers et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Hypervirulent Klebsiella pneumoniae clones causing bacteraemia in adults in a teaching hospital in Barcelona, Spain (2007–2013)

(2016) M. Cubero et al.   CLINICAL MICROBIOLOGY AND INFECTION

Emergence of KPC-producing Klebsiella pneumoniae hypervirulent clone of capsular serotype K1 that belongs to sequence type 11 in Mainland China

(2016) Dan-dan Wei et al.   DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE

Increasing incidence of carbapenemase-producing Escherichia coli and Klebsiella pneumoniae in Belgian hospitals

(2016) M. De Laveleye et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Multicentre investigation of carbapenemase-producing Escherichia coli and Klebsiella pneumoniae in German hospitals

(2016) Martin Kaase et al.   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Molecular epidemiology of KPC-producingKlebsiella pneumoniaefrom invasive infections in Italy: increasing diversity with predominance of the ST512 clade II sublineage

(2016) Viola Conte et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

PHASTER: a better, faster version of the PHAST phage search tool

(2016) David Arndt et al.   NUCLEIC ACIDS RESEARCH

Klebsiella pneumoniae Population Genomics and Antimicrobial-Resistant Clones

(2016) Kelly L. Wyres et al.   TRENDS IN MICROBIOLOGY

Emergence and interhospital spread of OXA-48-producing Klebsiella pneumoniae ST395 clone in Western Hungary

(2016) Krisztina Kovács et al.   Infectious Diseases

Interactions of Klebsiella pneumoniae with the Innate Immune System Vary in Relation to Clone and Resistance Phenotype

(2015) Iliana-Maria Pantelidou et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Extensive Capsule Locus Variation and Large-Scale Genomic Recombination within the Klebsiella pneumoniae Clonal Group 258

(2015) Kelly L. Wyres et al.   Genome Biology and Evolution

Clinical and molecular characteristics of multi-clone carbapenem-resistant hypervirulent (hypermucoviscous) Klebsiella pneumoniae isolates in a tertiary hospital in Beijing, China

(2015) Bei Yao et al.   INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES

Population Structure of Klebsiella pneumoniae Causing Bloodstream Infections at a New York City Tertiary Care Hospital: Diversification of Multidrug-Resistant Isolates

(2015) Angela Gomez-Simmonds et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Molecular Epidemiological Characteristics of Klebsiella pneumoniae Associated with Bacteremia among Patients with Pneumonia

(2015) Ryota Ito et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance inKlebsiella pneumoniae, an urgent threat to public health

(2015) Kathryn E. Holt et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Mapping the Evolution of Hypervirulent Klebsiella pneumoniae

(2015) Carsten Struve et al.   mBio

First detection of Klebsiella variicola producing OXA-181 carbapenemase in fresh vegetable imported from Asia to Switzerland

(2015) K. Zurfluh et al.   Antimicrobial Resistance and Infection Control

An outbreak of carbapenem-resistant OXA-48 – producing Klebsiella pneumonia associated to duodenoscopy

(2015) Axel Kola et al.   Antimicrobial Resistance and Infection Control

Genomic Analysis of the Emergence and Rapid Global Dissemination of the Clonal Group 258 Klebsiella pneumoniae Pandemic

(2015) Jolene R. Bowers et al.   PLoS One

A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data

(2014) David Coil et al.   BIOINFORMATICS

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Molecular epidemiology of OXA-48-producing Klebsiella pneumoniae in France

(2014) E. Liapis et al.   CLINICAL MICROBIOLOGY AND INFECTION

Carbapenem-Resistant Klebsiella pneumoniae Exhibit Variability in Capsular Polysaccharide and Capsule Associated Virulence Traits

(2014) Elizabeth Diago-Navarro et al.   JOURNAL OF INFECTIOUS DISEASES

Klebsiella variicola Is a Frequent Cause of Bloodstream Infection in the Stockholm Area, and Associated with Higher Mortality Compared to K. pneumoniae

(2014) Makaoui Maatallah et al.   PLoS One

Molecular dissection of the evolution of carbapenem-resistant multilocus sequence type 258Klebsiella pneumoniae

(2014) Frank R. DeLeo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

String test of hypervirulent Klebsiella pneumonia

(2014) A. Kumabe et al.   QJM-AN INTERNATIONAL JOURNAL OF MEDICINE

Epidemic Klebsiella pneumoniae ST258 Is a Hybrid Strain

(2014) L. Chen et al.   mBio

Comparative Population Analysis of Klebsiella pneumoniae Strains with Extended-Spectrum β-Lactamases Colonizing Patients in Rehabilitation Centers in Four Countries

(2013) A. Baraniak et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Intercontinental spread of OXA-48 beta-lactamase-producing Enterobacteriaceae over a 11-year period, 2001 to 2011

(2013) A Potron et al.   Eurosurveillance

Emergence of OXA-48 carbapenemase-producing Escherichia coli and Klebsiella pneumoniae in dogs

(2013) I. Stolle et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

wzi Gene Sequencing, a Rapid Method for Determination of Capsular Type for Klebsiella Strains

(2013) S. Brisse et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Hypervirulent (hypermucoviscous)Klebsiella pneumoniae

(2013) Alyssa S. Shon et al.   Virulence

Emergence of OXA-48-Type Carbapenemase-Producing Enterobacteriaceae in German Hospitals

(2012) Yvonne Pfeifer et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Rapid evolution and spread of carbapenemases among Enterobacteriaceae in Europe

(2012) R. Cantón et al.   CLINICAL MICROBIOLOGY AND INFECTION

VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing

(2012) D. C. Koboldt et al.   GENOME RESEARCH

Identification of acquired antimicrobial resistance genes

(2012) E. Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria

(2012) M. V. Larsen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Outbreak of OXA-48-Positive Carbapenem-Resistant Klebsiella pneumoniae Isolates in France

(2011) Gaelle Cuzon et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

ART: a next-generation sequencing read simulator

(2011) Weichun Huang et al.   BIOINFORMATICS

European dissemination of a single OXA-48-producing Klebsiella pneumoniae clone

(2011) A. Potron et al.   CLINICAL MICROBIOLOGY AND INFECTION

First outbreak of Klebsiella pneumoniae carbapenemase (KPC)-producing K. pneumoniae in Germany

(2010) C. Wendt et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS