Whole genome analyses of CMY-2-producing Escherichia coli isolates from humans, animals and food in Germany
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Whole genome analyses of CMY-2-producing Escherichia coli isolates from humans, animals and food in Germany
Authors
Keywords
Multidrug-resistant, Food chain, Plasmid, AmpC beta-lactamase
Journal
BMC GENOMICS
Volume 19, Issue 1, Pages -
Publisher
Springer Nature America, Inc
Online
2018-08-09
DOI
10.1186/s12864-018-4976-3
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Whole Genome Sequence Analysis of CTX-M-15 Producing Klebsiella Isolates Allowed Dissecting a Polyclonal Outbreak Scenario
- (2018) Laura Becker et al. Frontiers in Microbiology
- Plasmid-mediated resistance to cephalosporins and quinolones in Escherichia coli from American crows in the USA
- (2017) Ivana Jamborova et al. ENVIRONMENTAL MICROBIOLOGY
- Cefotaxime-resistant E. coli in dairy and beef cattle farms—Joint analyses of two cross-sectional investigations in Germany
- (2017) Katja Hille et al. PREVENTIVE VETERINARY MEDICINE
- Dynamics of CMY-2 producing E. coli in a broiler parent flock
- (2017) Anita Dame-Korevaar et al. VETERINARY MICROBIOLOGY
- Molecular characterisation of extended-spectrum β-lactamase (ESBL)-producing Escherichia coli isolates from hospital and ambulatory patients in Germany
- (2017) Michael Pietsch et al. VETERINARY MICROBIOLOGY
- Plasmids Carrying blaCMY -2/4 in Escherichia coli from Poultry, Poultry Meat, and Humans Belong to a Novel IncK Subgroup Designated IncK2
- (2017) Salome N. Seiffert et al. Frontiers in Microbiology
- Overview of molecular typing methods for outbreak detection and epidemiological surveillance
- (2017) A J Sabat et al. Eurosurveillance
- Host-Specific Patterns of Genetic Diversity among IncI1-Iγ and IncK Plasmids Encoding CMY-2 β-Lactamase in Escherichia coli Isolates from Humans, Poultry Meat, Poultry, and Dogs in Denmark
- (2016) Katrine Hartung Hansen et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Escherichia coli and urinary tract infections: the role of poultry-meat
- (2016) A.R. Manges CLINICAL MICROBIOLOGY AND INFECTION
- First report of Escherichia coli co-producing NDM-1 and OXA-232
- (2016) Anna Both et al. DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE
- Circulation of clonal populations of fluoroquinolone-resistant CTX-M-15-producing Escherichia coli ST410 in humans and animals in Germany
- (2016) Linda Falgenhauer et al. INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS
- Dynamics of extended-spectrum cephalosporin resistance in pathogenic Escherichia coli isolated from diseased pigs in Quebec, Canada
- (2016) Seyedehameneh Jahanbakhsh et al. INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS
- Distribution of ESBLs, AmpC β-lactamases and carbapenemases among Enterobacteriaceae isolates causing intra-abdominal and urinary tract infections in the Asia-Pacific region during 2008–14: results from the Study for Monitoring Antimicrobial Resistance Trends (SMART)
- (2016) Shio-Shin Jean et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Colonization with third-generation cephalosporin-resistant Enterobacteriaceae on hospital admission: prevalence and risk factors
- (2016) A. Hamprecht et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Diversity of STs, plasmids and ESBL genes amongEscherichia colifrom humans, animals and food in Germany, the Netherlands and the UK
- (2016) Michaela J. Day et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Real-Time Genome Sequencing of Resistant Bacteria Provides Precision Infection Control in an Institutional Setting
- (2016) Alexander Mellmann et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
- (2016) Ivica Letunic et al. NUCLEIC ACIDS RESEARCH
- Prevalence of mcr-1 in E. coli from Livestock and Food in Germany, 2010–2015
- (2016) Alexandra Irrgang et al. PLoS One
- Cefotaxime-resistant Escherichia coli in broiler farms—A cross-sectional investigation in Germany
- (2016) Johanna Hering et al. PREVENTIVE VETERINARY MEDICINE
- Introduction of quinolone resistant Escherichia coli to Swedish broiler population by imported breeding animals
- (2016) Stefan Börjesson et al. VETERINARY MICROBIOLOGY
- Detection, Characterization, and Typing of Shiga Toxin-Producing Escherichia coli
- (2016) Brendon D. Parsons et al. Frontiers in Microbiology
- Virulence, Antimicrobial Resistance Properties and Phylogenetic Background of Non-H7 Enteropathogenic Escherichia coli O157
- (2016) Mithila Ferdous et al. Frontiers in Microbiology
- Dissemination of the chromosomally encoded CMY-2 cephalosporinase gene in Escherichia coli isolated from animals
- (2015) Liang-Xing Fang et al. INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS
- Extended-spectrum beta-lactamase-producing Shiga toxin gene (stx1)-positive Escherichia coli O91:H14 carrying blaCTX-M-15 on an IncI1-ST31 plasmid isolated from a human patient in Germany
- (2015) Mardjan Arvand et al. INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY
- Rapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data
- (2015) Katrine G. Joensen et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Utility of Whole-Genome Sequencing of Escherichia coli O157 for Outbreak Detection and Epidemiological Surveillance
- (2015) Anne Holmes et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Guide to the various phylogenetic classification schemes for Escherichia coli and the correspondence among schemes
- (2015) Olivier Clermont et al. MICROBIOLOGY-SGM
- Complete Sequencing of IncI1 Sequence Type 2 Plasmid pJIE512b Indicates Mobilization ofblaCMY-2from an IncA/C Plasmid
- (2014) Kaitlin A. Tagg et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing
- (2014) Alessandra Carattoli et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data
- (2014) David Coil et al. BIOINFORMATICS
- Trimmomatic: a flexible trimmer for Illumina sequence data
- (2014) Anthony M. Bolger et al. BIOINFORMATICS
- RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
- (2014) Alexandros Stamatakis BIOINFORMATICS
- Escherichia coli ST131, an Intriguing Clonal Group
- (2014) M.-H. Nicolas-Chanoine et al. CLINICAL MICROBIOLOGY REVIEWS
- Spread of Extended Spectrum Cephalosporinase-Producing Escherichia coli Clones and Plasmids from Parent Animals to Broilers and to Broiler Meat in a Production Without Use of Cephalosporins
- (2014) Yvonne Agersø et al. Foodborne Pathogens and Disease
- Expansive spread of IncI1 plasmids carrying blaCMY-2 amongst Escherichia coli
- (2014) Hanna E. Sidjabat et al. INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS
- High diversity of plasmids harbouring blaCMY-2 among clinical Escherichia coli isolates from humans and companion animals in the upper Midwestern USA
- (2014) Valeria Bortolaia et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Real-Time Whole-Genome Sequencing for Routine Typing, Surveillance, and Outbreak Detection of Verotoxigenic Escherichia coli
- (2014) K. G. Joensen et al. JOURNAL OF CLINICAL MICROBIOLOGY
- Prevalence and potential risk factors for the occurrence of cefotaxime resistant Escherichia coli in German fattening pig farms—A cross-sectional study
- (2014) Johanna Hering et al. PREVENTIVE VETERINARY MEDICINE
- Dissemination of Cephalosporin Resistance Genes between Escherichia coli Strains from Farm Animals and Humans by Specific Plasmid Lineages
- (2014) Mark de Been et al. PLoS Genetics
- Horizontal gene transfer in the human gastrointestinal tract: potential spread of antibiotic resistance genes
- (2014) Jennifer R Huddleston Infection and Drug Resistance
- Extended-Spectrum-β-Lactamase-Producing Escherichia coli as Intestinal Colonizers in the German Community
- (2013) Giuseppe Valenza et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Longitudinal Monitoring of Extended-Spectrum-Beta-Lactamase/AmpC-Producing Escherichia coli at German Broiler Chicken Fattening Farms
- (2013) H. Laube et al. APPLIED AND ENVIRONMENTAL MICROBIOLOGY
- Complete nucleotide sequence of a conjugative IncF plasmid from anEscherichia coliisolate of equine origin containingblaCMY-2within a novel genetic context
- (2013) Maria Karczmarczyk et al. FEMS MICROBIOLOGY LETTERS
- Identical plasmid AmpC beta-lactamase genes and plasmid types in E. coli isolates from patients and poultry meat in the Netherlands
- (2013) Guido M. Voets et al. INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY
- Presence of β-lactamases in extended-spectrum-cephalosporin-resistant Salmonella enterica of 30 different serovars in Germany 2005–11
- (2013) Christoph Eller et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Prevalence of extended-spectrum- -lactamase-producing Escherichia coli and spread of the epidemic clonal lineage ST131 in nursing homes in Hesse, Germany
- (2013) M. Arvand et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Molecular epidemiology of extended-spectrum -lactamase-, AmpC -lactamase- and carbapenemase-producing Escherichia coli and Klebsiella pneumoniae isolated from Canadian hospitals over a 5 year period: CANWARD 2007-11
- (2013) A. J. Denisuik et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Updating benchtop sequencing performance comparison
- (2013) Sebastian Jünemann et al. NATURE BIOTECHNOLOGY
- The Epidemic of Extended-Spectrum- -Lactamase-Producing Escherichia coli ST131 Is Driven by a Single Highly Pathogenic Subclone, H30-Rx
- (2013) L. B. Price et al. mBio
- Extended-spectrum β-lactamase-producing and AmpC-producing Escherichia coli from livestock and companion animals, and their putative impact on public health: a global perspective
- (2012) C. Ewers et al. CLINICAL MICROBIOLOGY AND INFECTION
- VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
- (2012) D. C. Koboldt et al. GENOME RESEARCH
- Identification of acquired antimicrobial resistance genes
- (2012) E. Zankari et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria
- (2012) M. V. Larsen et al. JOURNAL OF CLINICAL MICROBIOLOGY
- The CTX-M-15-Producing Escherichia coli Clone O25b: H4-ST131 Has High Intestine Colonization and Urinary Tract Infection Abilities
- (2012) Sophie Vimont et al. PLoS One
- Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011
- (2012) Y. H. Grad et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Characterization of Salmonella enterica Serovar Typhimurium Isolates Harboring a Chromosomally Encoded CMY-2 β-Lactamase Gene Located on a Multidrug Resistance Genomic Island
- (2011) Francis Shahada et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Fast and accurate long-read alignment with Burrows–Wheeler transform
- (2010) Heng Li et al. BIOINFORMATICS
- Cephalosporin and fluoroquinolone combinations are highly associated with CTX-M β-lactamase-producing Escherichia coli: a case–control study in a French teaching hospital
- (2010) P. Cassier et al. CLINICAL MICROBIOLOGY AND INFECTION
- AmpC β-lactamases in Escherichia coli: emergence of CMY-2–producing virulent phylogroup D isolates belonging mainly to STs 57, 115, 354, 393, and 420, and phylogroup B2 isolates belonging to the international clone O25b–ST131
- (2010) Jesús Oteo et al. DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE
- Resistance to cephalosporins and carbapenems in Gram-negative bacterial pathogens
- (2010) Yvonne Pfeifer et al. INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY
- Prevalence and molecular characterization of clinical isolates of Escherichia coli expressing an AmpC phenotype
- (2010) Rikke Lind Jørgensen et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Escherichia coli O25b-ST131: a pandemic, multiresistant, community-associated strain
- (2010) B. A. Rogers et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
- Genetic Context of Plasmid-Carried blaCMY-2-Like Genes in Enterobacteriaceae
- (2009) C. Verdet et al. ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Resistance Plasmid Families in Enterobacteriaceae
- (2009) A. Carattoli ANTIMICROBIAL AGENTS AND CHEMOTHERAPY
- Sporadic occurrence of CMY-2-producing multidrug-resistant Escherichia coli of ST-complexes 38 and 448, and ST131 in Norway
- (2009) U. Naseer et al. CLINICAL MICROBIOLOGY AND INFECTION
- AmpC -Lactamases
- (2009) G. A. Jacoby CLINICAL MICROBIOLOGY REVIEWS
- Emergence of carbapenem-non-susceptible extended-spectrum -lactamase-producing Klebsiella pneumoniae isolates at the university hospital of Tubingen, Germany
- (2009) S. Grobner et al. JOURNAL OF MEDICAL MICROBIOLOGY
- Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains
- (2008) Françoise Jaureguy et al. BMC GENOMICS
- Change in the prevalence of extended-spectrum- -lactamase-producing Escherichia coli in Japan by clonal spread
- (2008) S. Suzuki et al. JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY
Discover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversationPublish scientific posters with Peeref
Peeref publishes scientific posters from all research disciplines. Our Diamond Open Access policy means free access to content and no publication fees for authors.
Learn More